Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g03200 ATGCTAGAAAACCAATGGAAAATAAGAAAAATGCAGACAACACAAGGAAGAACTGATCCAAATCAAACCACTGGAATTTCAATCCAAAACTGTACTATTGATGCTGCACCTGATTTGGCTAATGACTTGAATTCGACATCGAGTTACTTAGGTAGACCATGGAAGATTTATTCAAGAACTGTTTATATGCAATCATATATTGGTGATTTTGTTGATCCTTCGGGTTGGTTAGAGTGGAATGGAACACTTGGATTATACACTATTTTTTATGGTGAGTTTAATAACTATGGACCTGGTTCTATAACTGATAATAGGGTTCAATGGCCTGGTTATTTTCTTTTGAATGATACTTAA 354 0.3446 MLENQWKIRKMQTTQGRTDPNQTTGISIQNCTIDAAPDLANDLNSTSSYLGRPWKIYSRTVYMQSYIGDFVDPSGWLEWNGTLGLYTIFYGEFNNYGPGSITDNRVQWPGYFLLNDT 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g03200 117 Gene3D - 3 117 IPR012334 -
Trre3g03200 117 Pfam Pectinesterase 10 113 IPR000070 GO:0030599|GO:0042545
Trre3g03200 117 PANTHER PECTINESTERASE 9 111 - -
Trre3g03200 117 SUPERFAMILY Pectin lyase-like 11 114 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g03200 Trre-Chr3 39670364 39670717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g03200 7 115 Carbohydrate Esterase AT3G10720 66.055 4.95e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g03200 K01051 - gmx:100816503 186.808