LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g03162	ATGGGAGACAGTGACGTTGAAGGCGGTGCTGCTGGAGATGACGGTTTTCATTCTCCGATCGGCCGTAAATATCGTCCGGTCTTGGCTAACGATCGTGCTGTTCTTGAGATGTCTTCGATAGATCCAGGATCTTCTTCTTCCGCTTCTTCTTCTGTTTTTCCAGACCAACCTCCTAATCTCAGAAAAATAAATGTAAGTAAGAGTGGGAATGGGAGTTCAGATGCTAAAGATGGGAATTCTCTTCATCAACCTCAACCTAATGGACCCCAGCAGGAATCTAAACTGGAACTCTTTGGTTTTGATTCTCTTGTCAACATTCTTGGTCTCAAAAGCATGACTGGTGAGCAAATCGCACCGCCGTCTAGTCCTAGAGATGGTGAGGATATTACAATTACTGCTGGGCTGCCAAAGCCTGATGCTCCCAAACTAGGTACAATGATGGGTGTATTCATTCCGTGTGTTCAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGTATGGCTGGCATAGGAGAGACATTGGTTCTTGTTGCTATGTGTGGTACTTGTACGTTCCTCACTTCAATATCACTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGCGGACCATACTATCTAATAGGTCGCGCGCTTGGTCCCGAAGTTGGAGTTAGTATTGGTTTATGCTTCTTCCTTGGAAATGCAGTTGCTGGAGCTCTGTATGTATTGGGAGCTGTAGAAACATTTTTGAAAGCAGTTCCTTCTGCTGGAATTTTTAGAGAGACTATCACACAAGTTAATGGTACTGCAATTGCACAACCGATAGAGAGTCCAAGTTCACACGACCTTCAAATTTATGGGATTGTTGTGACTATTGTGTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCATTTCTCATACCTGTTTTATTCTCACTCATCTGCATATATTTGGGAATTCTGTTGGCAAAGGAGGATCATCCCACAGAGGGAGTTACTGGGTTGAGTATGAAGACTATTAAAGAAAATTGGAGTTCAGATTACCAAAAGACTAACGATGCTGGAATTCCAGAACCTGATGGTTCTGTAACCTGGGATTTCAATTCTTTGGTGGGCCTCTTTTTCCCAGCGGTGACAGGAATAATGGCAGGTTCTAACCGATCATCTTCTTTGCGAGATACGCAACGATCTATTCCTGTTGGAACTTTATCTGCAACTCTTGTAACTTCTTGTATGTATCTTATTTCTGTGATAATGTTTGGCGCCATTGCCACCAGAGAGAAGCTTTTAACTGACAGGTTGCTTACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACCATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCGCGTCTGCTTGCCGCTATAGCCAATGATGATATTTTACCTATTCTGAACTACTTTAAAGTTGCAGATGGCAGTGAGCCACATGTTGCTACCCTTTTTACTGCTTTCCTATGTATTGGGTGTGTCATCATTGGGAATCTTGATCTTATCACTCCAACTGTGACCATGTTTTTCCTTCTGTGTTATTCTGGTGTCAACTTATCCTGCTTCCTTCTCGATCTACTAGATGCTCCTAGTTGGCGTCCTCGGTGGAAATTTCATCATTGGAGTTTGTCGCTTCTAGGAGCATTACTTTGCGTAGTGATCATGTTCCTAATCTCTTGGTCATTCACCGTGGTTTCTTTGGCCCTTGCAAGCCTTATATACAAGTACGTGAGCATCAAAGGAAAGGCTGGGGACTGGGGAGATGGTTTTAAAAGTGCTTATTTCCAACTTGCACTTCGTAGCCTTCGGTCGCTAGGAGCAAATCAAGTGCACCCAAAGAATTGGTATCCAATTCCGCTTGTATTTTGTCGACCCTGGGGCAAACTGCCAGAAAATGTTCCCTGCCATCCGAAACTTGCAGACTTTGCTAACTGTATGAAGAAGAAAGGTCGTGGAATGACCATATTTGTCTCTATACTAGACGGGGATTACCATGAATGTGCTGAAGAGGCCAAGGCAGCTTGTAAGCAACTTAGTACCTATATTGAGTACAAGAATTGTGAAGGTGTGGCCGAGATTGTTGTAGCTCCTAACATGTCTGATGGTTTTCGTGGCATCGTTCAGACAATGGGCCTTGGTAATCTTAAGCCGAACATTGTGGTGATGCGTTATCCAGAAATCTGGCGCCGGGAGAACTTAACTGATATCCCCGCCACCTTTGTTGGTATAATTAATGACTGCATTGTTGCAAACAAGGCAGTAGTTATAGTGAAAGGTCTGGATGAATGGCCAAATGTGTACCAGAAGCAGTACGGTACAATTGATTTGTATTGGATTGTAAGAGATGGCGGTCTCATGCTACTTCTCTCTCAATTGCTTCTTACCAAAGAGAGCTTTGAGAGTTGTAAGATTCAGGTTTTCTGTATTGCAGAAGACGATGCAGATGCAGAGGGGCTAAAAGCTGATGTTAAAAAATTCCTTTATGATCTTCGGATGCAGGCAGAAGTCTTTGTCATAACAATGAAATGGGAAGAACAAGTGGATAGCGGGTCTCCGCAAGATGAGTCATTAGACGCATTTACTAGTGCCAATCAAAGAATTGTTGATTATTTAACCCAAATGAAGGCAACAGCAGAGAGAGAAGGTGCCCCTCTTATGGCAGATGGTAAGACCGTGGTTGTGAACGAGAAGCAAGTAGAAAAGTTTTTATACACAACTCTTAAGCTGAATTCCATAATTTTGAGATACTCGAGAATGGCTGCTGTTGTTTTAGTAAGTCTTCCTCCCCCTCCATTGTGCCATCCAGCATATTTCTATATGGAGTATATGGATCTGTTGCTGGAGAATGTACCAAGGATTTTGATTGTAAGAGGATATCGTAGAGATGTTGTAACTCTATTCACATAG	2970	0.4293	MGDSDVEGGAAGDDGFHSPIGRKYRPVLANDRAVLEMSSIDPGSSSSASSSVFPDQPPNLRKINVSKSGNGSSDAKDGNSLHQPQPNGPQQESKLELFGFDSLVNILGLKSMTGEQIAPPSSPRDGEDITITAGLPKPDAPKLGTMMGVFIPCVQSILGIIYYIRFSWIVGMAGIGETLVLVAMCGTCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPSAGIFRETITQVNGTAIAQPIESPSSHDLQIYGIVVTIVLCFIVFGGVKMINRVAPAFLIPVLFSLICIYLGILLAKEDHPTEGVTGLSMKTIKENWSSDYQKTNDAGIPEPDGSVTWDFNSLVGLFFPAVTGIMAGSNRSSSLRDTQRSIPVGTLSATLVTSCMYLISVIMFGAIATREKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGALLCVVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLVFCRPWGKLPENVPCHPKLADFANCMKKKGRGMTIFVSILDGDYHECAEEAKAACKQLSTYIEYKNCEGVAEIVVAPNMSDGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNVYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEDDADAEGLKADVKKFLYDLRMQAEVFVITMKWEEQVDSGSPQDESLDAFTSANQRIVDYLTQMKATAEREGAPLMADGKTVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLCHPAYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT	989

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g03162	989	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	122	986	IPR004842	GO:0006811\|GO:0015377\|GO:0016020
	Trre3g03162	989	MobiDBLite	consensus disorder prediction	39	92	-	-
	Trre3g03162	989	Gene3D	Amino acid/polyamine transporter I	141	606	-	-
	Trre3g03162	989	MobiDBLite	consensus disorder prediction	38	92	-	-
	Trre3g03162	989	FunFam	Cation-chloride cotransporter 1	142	606	-	-
	Trre3g03162	989	Pfam	Solute carrier family 12	658	779	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Trre3g03162	989	Pfam	Solute carrier family 12	790	988	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Trre3g03162	989	Pfam	Amino acid permease	148	624	IPR004841	GO:0016020\|GO:0055085
	Trre3g03162	989	NCBIfam	K-Cl cotransporter	82	989	IPR004842	GO:0006811\|GO:0015377\|GO:0016020
	Trre3g03162	989	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g03162	Trre-Chr3	38494113	38506374	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g03162	143	989	Inorganic Solute Cotransporters	AT1G30450	83.019	0.0	1457

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g03162	K14427		-	gmx:100795205	1722.6