Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02892 ATGCGGAGCCACATTATGTGTAGTGGGTGTAGGAACCTCTTACTTTACCCTAGAGGAGCGAGCAATGTTTGTTGTGCATTGTGCAGCACAATTACCCCTGTTCTTCCTCCCGGTATGGAAATGTCACAAATTTATTGTGGAGGCTGTAGGACATTGCTAATGTACTCTCGTGGAGCTACTAGCGTGCGATGTTCCTGCTGTAATACTTTAAATCTAGTACCAGATTCTAGTCAAATGAGCCATATCCATTGTGGGAACTGCAGGACAACACTTATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCAATTTGTCACTATATTACTAATGTCTGTATGACCAATGGAAGGCCGCCTGTTCCTGCACAGAGACCTAATGAAACAACCGGCTCCGGAACGTCAAGACCCCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCCATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAACGTTGTTGTGGGCGTTACAACAGAGAAGAAATGA 513 0.4483 MRSHIMCSGCRNLLLYPRGASNVCCALCSTITPVLPPGMEMSQIYCGGCRTLLMYSRGATSVRCSCCNTLNLVPDSSQMSHIHCGNCRTTLMYPYGAPSVKCAICHYITNVCMTNGRPPVPAQRPNETTGSGTSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKK 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02892 170 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Trre3g02892 170 NCBIfam zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Trre3g02892 170 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Trre3g02892 170 PANTHER PROTEIN LSD1 3 169 IPR040319 -
Trre3g02892 170 Pfam LSD1 zinc finger 84 108 IPR005735 -
Trre3g02892 170 Pfam LSD1 zinc finger 7 31 IPR005735 -
Trre3g02892 170 Pfam LSD1 zinc finger 46 69 IPR005735 -
Trre3g02892 170 MobiDBLite consensus disorder prediction 121 139 - -
Trre3g02892 170 MobiDBLite consensus disorder prediction 118 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02892 Trre-Chr3 33466677 33471362 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre3g02892 zf-LSD1 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02892 - K12191 gmx:100776394 287.73