Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02886 ATGGAACAGTTGAAATTGGATGCAAAAGAGGATAGTCCTCTTCGGCACAAGCCAAAAAATAACAATGCGGTCGAGTCTTCTGATAGTCTGAGAAGTAAAAAGGTATCAGCTCGATGGGATCCAACTGAAGCATGTCGGCCAATAATGGATGAAGCACCTGTGTTTCATCCGACTATTGAAGAATTTGAAGATACACTAAGTTATATAGCAAAGATACGGCCGTTAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCGGCTTGTTGGGTTCCACCTTGCCTTCTTATGGAGAAAGATATATGGGAAAATGCTGAGTTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAACGGAAACGTAGAAGTAGAAAGAACTCCAAAACAGGAACATGTAGGAGAGTTTCCAATTCTGCTTCTGAAGCTAAAAATGCTTCTGAAGCTGATGAGAAATATGGATTCCAATCAGGGTCGGACTTCACGTTTAAAGACTTTCAGCAATATGCTAAATACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGAAGATGGAAAGGTCAGTGACAGTAACCAGGAAAAGAGACGAATGCCCTCCGAGGAGGAAATTGAAGGGGAATACTGGCGAATAGTTGAACAACCAACTGATGAAGTCGAGGTGTATTATGGAGCTGATTTAGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCCTCATCCTTAACTAAGGGTTATCCGGACCAGTATGCCCTTTCTGGTTGGAATCTAAATAACTTCCCTCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGATATCTCTGGAGTACTAGTTCCATGGCTTTATGTTGGTATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACCCAAAGATGTGGTATGGAGTACCTGGAAGCCATGCTTCCGCTTTTGAAGATGCAATGAAGAAGCACCTGCCTGATCTGTTCGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCGTCAATTCTTAAATCAGAGGGAGTTCCCGTATATCGCACTGTTCAGCATTCTGGGGAATTTGTCATTACCTTTCCGAGGGGGTACCACTCCGGGTTCAACTGTGGGTTCAACTGTGCAGAAGCAGTAAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTTTACAGTTTACAACGCCGTAAGACATCGTTGTCACATGACAAGCTTTTATTTGGATCATCACTGGAAGCTATACGAGCCCTTGCAGAATTAACTCTTCATGGAAAGGAAACTCCAAAAAATTTGAAATGGAAAAGTGTCTCTGGAAAGGATGGTGTTCTTACTAAGGCATTTAAGGCAAGGATAGAGATGGAAGAAGAGCGGCTAGACTGTCTTCCAACTCATTTTAAGTTGCTGAAGATGACCAATGACTTCGACGTCCATACTGAAAGAGAATGCTTCTCTTGCTTCTACGACTTGTACCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGATAGGTATTCTTGTCTGAAGCATGCTAGTTCGTTCTGCTCGTGTGAATTGGAAAAAAGATTTGTTCTTTCTCGATATAATATGAGCGAGCTAAACAAATTGCATGAAGCACTAGAAGGAGATTCTCTTGCTCTTCAGTTATGGGAAAATGAAAACTTCGGAATGGTTTCTGCCAACGCCAATGAGATTTGCATAGATAAACAAGAGATGGAGAGAAACAAGGGTCTTGAAGAAACTGGTTGCGAAGGAACCAAGGATAGTTCAAATATAAATGCACCTAGTAATGTTACTTCAGAGCTAATGCAGTCTGAATCTCATCTTGTAACTCTTAGTGCACCAAATGGAAGTACAGATAGTGATAGTGACAATAAGATGGTCGTAGACAAAGATAAGCTGGATCAGGCAGGTTCTCTGGATTTGAATGTTGATGTTATATCTGCTGAAAATGAGAAGTGTTTGCCGCATATTGCTGATAACCATAACAACAAGGGTGATTCAGTAGAGGAAAAACTATGTTGTTCGGAGACCAAAAAGGAACACGACAACATGGAACTTGATGGTGCGGGTGACCTATTACATTCATCTTCTGTTGTGAAGACAGAAGTTTCATCGTGCTCCAGGGATGTTAACAATTCTTGTACATCTGACGGTGGAAAATATGAGGCGGATCTTCAAATGGATTCAGATTCAAGAAAGAAACCCAAAATTGTATTTGAAAACGAAGTCATAAACACCACAAGTGCGAGTATATCTTTAACACAGGAAAGCTTCCTAATGCAAATTTTTGGTACTTCTGTCAAGCCTATTAGTTTGGGATCTGTTGTTCATGGAAAGCTATGGTGTAGTAAGCATGCTATATTTCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGTATCCTCAATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTTATTGATGCTGGACTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGACTGTCCAAGTGACGCATTCACCGACACCTCAGCTAATAAGTGTTGGGAATCAGTTCTAAAGAGACTACATAATGAAATCATGGAGCGAAGGAATCAAGGTGAACTTGAACTTCCATCCTTAGAGCTTCTGAAAAGCGTTAACGGACTTAGGATGTTTGGCTTCCTTTTGCCGTCCATTATCCAGGCCATCGAAGCTCAAGATCCAAGTCATCAGTGTGCAGAATATTGGAATCACAAAGCTTTCCCTACATCTCCAGGCAGTGTCATCGATAACTGCAATTGTTCAAGTAGCCCTATAGATAATAATGTCAATACCAAAGTTTTTGGTATCCATTTGGTTGACCAGGCAAAGGAAACCATCGGAGGAAGTTGTCATTCTCTTGAAGAGATGAAATCAATATTACAAAAGGCAAATCCTGATGAACTAAGCTCATTGCGCAAGTTACTTGATTCTGACACACAATGCTCCGAGTGGAGAATGGCATTGACATCACTGATGGATGAGATTCAGAAAGCTTTGCAGCTATACTAA 3129 0.4084 MEQLKLDAKEDSPLRHKPKNNNAVESSDSLRSKKVSARWDPTEACRPIMDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLMEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRSRKNSKTGTCRRVSNSASEAKNASEADEKYGFQSGSDFTFKDFQQYAKYFKECYFGLKDANEDGKVSDSNQEKRRMPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDPKMWYGVPGSHASAFEDAMKKHLPDLFEEVPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKETPKNLKWKSVSGKDGVLTKAFKARIEMEEERLDCLPTHFKLLKMTNDFDVHTERECFSCFYDLYLSAVGCECSPDRYSCLKHASSFCSCELEKRFVLSRYNMSELNKLHEALEGDSLALQLWENENFGMVSANANEICIDKQEMERNKGLEETGCEGTKDSSNINAPSNVTSELMQSESHLVTLSAPNGSTDSDSDNKMVVDKDKLDQAGSLDLNVDVISAENEKCLPHIADNHNNKGDSVEEKLCCSETKKEHDNMELDGAGDLLHSSSVVKTEVSSCSRDVNNSCTSDGGKYEADLQMDSDSRKKPKIVFENEVINTTSASISLTQESFLMQIFGTSVKPISLGSVVHGKLWCSKHAIFPKGFKSRVNFFSILNPTRICSYVSEVIDAGLLGPLFKVTMEDCPSDAFTDTSANKCWESVLKRLHNEIMERRNQGELELPSLELLKSVNGLRMFGFLLPSIIQAIEAQDPSHQCAEYWNHKAFPTSPGSVIDNCNCSSSPIDNNVNTKVFGIHLVDQAKETIGGSCHSLEEMKSILQKANPDELSSLRKLLDSDTQCSEWRMALTSLMDEIQKALQLY 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02886 1042 Pfam F/Y-rich N-terminus 806 850 IPR003888 GO:0005634
Trre3g02886 1042 SUPERFAMILY Clavaminate synthase-like 203 444 - -
Trre3g02886 1042 Gene3D Cupin 37 413 - -
Trre3g02886 1042 MobiDBLite consensus disorder prediction 1 22 - -
Trre3g02886 1042 Coils Coil 1025 1042 - -
Trre3g02886 1042 Gene3D - 800 939 - -
Trre3g02886 1042 SMART fyrn_3 809 853 IPR003888 GO:0005634
Trre3g02886 1042 FunFam Putative lysine-specific demethylase JMJ16 801 939 - -
Trre3g02886 1042 Pfam F/Y rich C-terminus 857 944 IPR003889 GO:0005634
Trre3g02886 1042 MobiDBLite consensus disorder prediction 124 142 - -
Trre3g02886 1042 ProSiteProfiles FYR domain FYRC motif profile. 855 945 IPR003889 GO:0005634
Trre3g02886 1042 PANTHER LYSINE-SPECIFIC DEMETHYLASE 46 844 - -
Trre3g02886 1042 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Trre3g02886 1042 ProSiteProfiles FYR domain FYRN motif profile. 795 853 IPR003888 GO:0005634
Trre3g02886 1042 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Trre3g02886 1042 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Trre3g02886 1042 MobiDBLite consensus disorder prediction 1 38 - -
Trre3g02886 1042 MobiDBLite consensus disorder prediction 118 161 - -
Trre3g02886 1042 SMART fyrc_3 859 953 IPR003889 GO:0005634
Trre3g02886 1042 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Trre3g02886 1042 Pfam jmjN domain 53 86 IPR003349 -
Trre3g02886 1042 SMART JmjN_1 51 92 IPR003349 -
Trre3g02886 1042 SMART cupin_9 263 429 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02886 Trre-Chr3 33285483 33290787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02886 799 979 JUMONJI Transcription Factor Family AT1G30810 50.000 6.52e-51 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre3g02886 JmjC 7.4e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02886 K11446 - gmx:100801775 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02886 3 33285483 33290787 Trre3g02886 3 33285483 33290787 ECH