Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02852 ATGGATGCTAAATTTGAGGGTAAAAATAAGCATTTGTATGGACCAGTAGTGCCTGAGTTGAAGAGTGGTAGTGTTGGAATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTAGAAATCGTCAACTTTTACCGGTTGATCCCGAAGTATCTCAAAATGTTGATGCTTCTAACAATTTGGTTTCTGGTGAAAGAAGTAGAGAATTGGAGAAGAGAAGGAGAGATTTTGTTGGTGAAGGGTTGGAGATGAATGATGATATTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGGGAAGAAAAAAGTGGTAAGAAAACGAAGATTGGTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAACGCAAAGGATTACCATCGTCGCCATAAAGTTTGTGATGTGCATTCTAAGGCTAGTAAAGCGCTGGTTGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGCTCTTGAAGAGTTTGATGAAGGGAAGAGAAGCTGCCGTAGGCGTCTTGCAGGCCATAATAAGAGGAGGAGGAAGACACATCCTGATGGTACTGAAGTTAATGGAGGCCCTCCAAATGAAGAAAGGGGCAGTAGCTATCTATTGATGAGTCTACTAAGGATACTGTCCAATATGCATTCAACTGGGGAAGATCATACAAGAAACGTGGATGTCATATCTCGTCTAGTTGGGAACCTGACAAGTTTAGCCGGTACATTTAACGGAAGAAATATAATGTCCTTATTGGAGGGACCTCAAGATTTAGTAAAAGCGGGGACATCTGGAGCTGCACAGAATGTTCCAAACTCAAATACAAATGGTGCTGAACCACCAAGACCTATTGATTCTCGTGTTGAAATGAGTAATGGTCTAATCCGTCAGGACCCTCCCGAGTCTAGGTTACCATGTGCGACAGTTCCTGTCAATCACACGACACAAAAATGTATACCTTCAAGCATTGTTGGAGGAGTAGGATGTTTAAAACCTCCTTTGGTACCACACTCATCAAATGTACTTCCTTCAAGGGGTAGCCTTCCACCTCGACCAGTTGCCACAGAGACTACAGCTGGAAGAAATGGGTTAAGTAATATTGACCTGAATAGCGTATACCATGACGTGGAGGATTATGTTGAGAACCCCACAATTTCTCGTTCGCATGTGGCTTTAGGGGTTGGGTCCCACAATCATCCTTCACCGGTACAATGTGATTCTCTCAAGTCAAGTCCTCCACAGACGAGTAGAAACTCGGATTCAACCTCTACCCAGTCACCGTCTAGTTCTAGTGGAGAAGGGCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGTAAGGATCCTAATGATTTCCCCCTTGCTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGACCAGGATGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGAATGAGCTATGCTATAATCTGGGATCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTCTTTGGAAAACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAGGTGGTCTTAGATCTGCCATTGCGTCTTGGAAGCCCACAAAATTGTCAGATTTTGTGTGTCAAACCCCTTGCTGTTTCTGCCATTGCAGACGTAAAATTTACTGTGAAAGGGTTAAACCTTTTTCTGTCTAGTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGATGATATGTGTTATGATTTGATTGATGGTGCTGATGCAGCCATCGGACATCATGAGCTTCAGAATCTCAGTTTCTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATGGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCCGAGCCTGAAATTTGTTCTGAGATATGTAATCTAGAGACTGTCATTGAAGCAGCAGAGACTGCTGATGACGTCCAGATCAAAGCCAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTTCTTCATAGAATTCGTGTGAAATTTAGGCTAGGGTCAATGGCACCTGTTCAAGATCCCTTCAATTTTAATCGCTATTCATGGCTTGTCGGCTTCTCTATGGACCACGATTGGTGCGCCGTGATGAAAAAACTCCTGGACATTATCTTTCAGGGTGAAGTTGATACTGGAGAACATACCTCAGCAGAGCTTGCGTTGTTAAACATGGGTCTTCTTCACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAACTTTGTGCCAGTTAAAGCGTCAGATGGTGGAGACAGTAACGAGATGCTAGTCAACAAGTCCCCTGAAAGGTTCGTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCTAGTATGAATGGCTATGAGAATGTATTGGACGCGTTAACTGATGATCCGGGAATGGTGGGAATTGAGGCATGGAAAAGTGCTAAAGACAACACAGGTTTGACACCCAATGACTATGCATCCCTTAAGGGCCACTACTCCTACATTCAACTTGTGCACAGGAAAACAAGCAAGAACAACCAAACTCAACATGTCCTTGACATACCTGGCACCCTTGTAGACGGAAACACAAAGAAACAATTAGATTTGCATAAGTCTTCAAAAGTTTTAAGTTTCCATACAGAGAAGATTGCGACAACAGCAATGCCAAATCATTGTGGGCTATGCCAACAGAAGTTGGCCTACAGCGGCAGCGGCGGCATGAGGAGGGCACTTGTTTATAGGCCTGCGATGCTTTCAATGGTTGCAATTGCAGCTGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCGCCGAGAGTTTACTATGTCTTCCAGCCTTTCAGCTGGGAATCATTGGACTATGGTTCGATATGA 3096 0.4325 MDAKFEGKNKHLYGPVVPELKSGSVGMESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLLPVDPEVSQNVDASNNLVSGERSRELEKRRRDFVGEGLEMNDDIGSLNLNLGGQVYPIMEGEEKSGKKTKIGVTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTHPDGTEVNGGPPNEERGSSYLLMSLLRILSNMHSTGEDHTRNVDVISRLVGNLTSLAGTFNGRNIMSLLEGPQDLVKAGTSGAAQNVPNSNTNGAEPPRPIDSRVEMSNGLIRQDPPESRLPCATVPVNHTTQKCIPSSIVGGVGCLKPPLVPHSSNVLPSRGSLPPRPVATETTAGRNGLSNIDLNSVYHDVEDYVENPTISRSHVALGVGSHNHPSPVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDFPLALRSQILSWLSHSPTEIESYIRPGCIILTICLRLENSAWNELCYNLGSSLRKLLAASNDSLWKTGWIYTRVRHSVAILYNGQVVLDLPLRLGSPQNCQILCVKPLAVSAIADVKFTVKGLNLFLSSSTRLLCALEGKYLVDDMCYDLIDGADAAIGHHELQNLSFSCHIPNMTGRGFIEVEDNGLSSCSFPFIVAEPEICSEICNLETVIEAAETADDVQIKAKLMEEKTRAMNFVQEMGWLLHRIRVKFRLGSMAPVQDPFNFNRYSWLVGFSMDHDWCAVMKKLLDIIFQGEVDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPVKASDGGDSNEMLVNKSPERFVFRPDTVGPAGLTPLHVAASMNGYENVLDALTDDPGMVGIEAWKSAKDNTGLTPNDYASLKGHYSYIQLVHRKTSKNNQTQHVLDIPGTLVDGNTKKQLDLHKSSKVLSFHTEKIATTAMPNHCGLCQQKLAYSGSGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLDYGSI 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02852 1031 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Trre3g02852 1031 MobiDBLite consensus disorder prediction 206 233 - -
Trre3g02852 1031 MobiDBLite consensus disorder prediction 298 313 - -
Trre3g02852 1031 Pfam SBP domain 142 215 IPR004333 GO:0003677
Trre3g02852 1031 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Trre3g02852 1031 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Trre3g02852 1031 FunFam Squamosa promoter-binding-like protein 14 133 203 - -
Trre3g02852 1031 SUPERFAMILY Ankyrin repeat 799 915 IPR036770 -
Trre3g02852 1031 MobiDBLite consensus disorder prediction 424 469 - -
Trre3g02852 1031 MobiDBLite consensus disorder prediction 433 469 - -
Trre3g02852 1031 MobiDBLite consensus disorder prediction 373 399 - -
Trre3g02852 1031 Gene3D - 781 929 IPR036770 -
Trre3g02852 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 125 830 IPR044817 GO:0003677
Trre3g02852 1031 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02852 Trre-Chr3 31802573 31811864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02852 1 1030 SBP-box Gene Family AT3G60030 45.307 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre3g02852 SBP 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02852 - - gmx:100776125 1550.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02852 3 31802573 31811864 Trre3g02852 3 31802573 31811864 ECH