Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02845 ATGGGAATTATTGTTGGTTTGTTCATTATAATCATTCTTGTGGTGCTATCGATATGTCTTACTTTAAGAAAGAAATCGAGAAGAGGCAACGGTGGCATGCATCCTCTTAGTCATATTCTGTCTATTTCAGAAGAGATCAAAGAAATTAGTGTCGATCAAGTTTCATCGAATAATCATCCGCAAAATGGTTCTTTCATGAGCTTGAATGACAAGTTTAGTGATGGCGATTCCGGAAAGGTTTTGATCCAAACAAAGAATGGAGATAATAGTAGTCAATCAGGCTCGTTTAATCGTTTAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGATAGCGGCGGTTTTAGGAGTATTTCGGCTTATAGGTCTTCGTCGCATCCTATATCTGCGCCATCGCCGTGTTCTGGTCTTCCTGAATTCTCTCACCTTGGCTGGGGCCACTGGTTTACACTAAGGGACTTGGAACTAGCAACAAATAGGTTTTCGAAGGACAATATTATCGGTGAAGGTGGATATGGAGTTGTCTATCGAGGTCAACTTATCAACGGGAATCCTGTTGCCGTTAAGAAGCTCCTCAATAATTTAGGGCAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTTCGACTTTTAGGCTTTTGCATTGAAGGAACTCACAGGCTATTGATTTATGAGTATGTTAACAACGGCAATTTAGAACAGTGGCTTCATGGAGCCATGCGGCAACATGGATATCTTACTTGGGAAGCTCGGATAAAAATTCTTCTTGGAACAGCCAAAGCGCTTGCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAGTCGAGCAATATTTTAATTGATGATAGCTTTAATGCAAAAATATCAGACTTTGGGCTTGCTAAGTTACTTGGTGCCGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCAGAATATGCGAATTCTGGCTTGTTAAATGAGAAGAGCGATGTTTATAGCTTTGGTGTATTGCTTCTTGAAGCAATTACAGGAAGAGATCCAGTCGATTATAGCCGATCAGCAACCGAGGTAAATTTGGTTGACTGGCTGAAGATGATGGTAGGGTGTAGGCGCTCAGAAGAGGTGGTGGACCCCAATATTGAGACTAGGCCATCAACTAGTGCTCTAAAACGATCCCTTTTAACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGCCAAGTTGTTCGCATGCTTGAATCAGAGGAATATCCTATACCTCGAGAGGATCGAAGACGTCGAAGGAGCCAAGCAGGAAACATCGAGGTAGAGAGCCAAAAGGAGAATTCAGATACAGATAAGAGTGACAATCCAGATCATAAACCAAATGGCAGTACGAACCAACACATCTAG 1452 0.4167 MGIIVGLFIIIILVVLSICLTLRKKSRRGNGGMHPLSHILSISEEIKEISVDQVSSNNHPQNGSFMSLNDKFSDGDSGKVLIQTKNGDNSSQSGSFNRLEKDLNGSQSGEDSGGFRSISAYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFSKDNIIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDSFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRSATEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRSLLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRRSQAGNIEVESQKENSDTDKSDNPDHKPNGSTNQHI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02845 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Trre3g02845 483 Gene3D Phosphorylase Kinase; domain 1 143 236 - -
Trre3g02845 483 SUPERFAMILY Protein kinase-like (PK-like) 145 441 IPR011009 -
Trre3g02845 483 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
Trre3g02845 483 ProSiteProfiles Protein kinase domain profile. 161 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02845 483 MobiDBLite consensus disorder prediction 433 483 - -
Trre3g02845 483 SMART serkin_6 161 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02845 483 MobiDBLite consensus disorder prediction 433 473 - -
Trre3g02845 483 PANTHER OS01G0323000 PROTEIN 2 463 - -
Trre3g02845 483 FunFam Putative receptor-like protein kinase 143 236 - -
Trre3g02845 483 CDD STKc_IRAK 167 433 - -
Trre3g02845 483 Gene3D Transferase(Phosphotransferase) domain 1 237 448 - -
Trre3g02845 483 MobiDBLite consensus disorder prediction 79 117 - -
Trre3g02845 483 FunFam Putative receptor-like serine/threonine-protein kinase 237 448 - -
Trre3g02845 483 Pfam Protein kinase domain 162 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02845 Trre-Chr3 31694875 31697486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02845 2 435 Trihelix Transcription Factor Family AT1G70460 41.818 2.12e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre3g02845 Pkinase 7.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02845 - - gmx:732653 823.157