Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02844 ATGGCGTCTGATCTAAATTCAGGGTTGTCAAAGAAAACATTTGTTTTTGGATTGAAAGTTTGGGTATTAATGGGAATTATTGTTGGTTTGTTCATTATAATCATTCTTGTGGTGCTATCGATATGTCTTACTTTAAGAAAGAAATCGAGAAGAGGCAACGGTGGCATGCATCCTCTTAGTCATATTCTGTCTATTTCAGAAGAGATCAAAGAAATTAGTGTCGATCAAGTTTCATCGAATAATCATCCGCAAAATGGTTCTTTCATGAGCTTGAATGACAAGTTTAGTGATGGCGATTCCGGAAAGGTTTTGATCCAAACAAAGAATGGAGATAATAGTAGTCAATCAGGCTCGTTTAATCGTTTAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGATAGCGGCGGTTTTAGGAGTATTTCGGCTTATAGGTCTTCGTCGCATCCTATATCTGCGCCATCGCCGTGTTCTGGTCTTCCTGAATTCTCTCACCTTGGCTGGGGCCACTGGTTTACACTAAGGGACTTGGAACTAGCAACAAATAGGTTTTCGAAGGACAATATTATCGGTGAAGGTGGATATGGAGTTGTCTATCGAGGTCAACTTATCAACGGGAATCCTGTTGCCGTTAAGAAGCTCCTCAATAATTTAGGGCAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTTCGACTTTTAGGCTTTTGCATTGAAGGAACTCACAGGCTATTGATTTATGAGTATGTTAACAACGGCAATTTAGAACAGTGGCTTCATGGAGCCATGCGGCAACATGGATATCTTACTTGGGAAGCTCGGATAAAAATTCTTCTTGGAACAGCCAAAGCGCTTGCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAGTCGAGCAATATTTTAATTGATGATAGCTTTAATGCAAAAATATCAGACTTTGGGCTTGCTAAGTTACTTGGTGCCGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCAGAATATGCGAATTCTGGCTTGTTAAATGAGAAGAGCGATGTTTATAGCTTTGGTGTATTGCTTCTTGAAGCAATTACAGGAAGAGATCCAGTCGATTATAGCCGATCAGCAACCGAGGTAAATTTGGTTGACTGGCTGAAGATGATGGTAGGGTGTAGGCGCTCAGAAGAGGTGGTGGACCCCAATATTGAGACTAGGCCATCAACTAGTGCTCTAAAACGATCCCTTTTAACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGCCAAGTTGTTCGCATGCTTGAATCAGAGGAATATCCTATACCTCGAGAGGATCGAAGACGTCGAAGGAGCCAAGCAGGAAACATCGAGGTAGAGAGCCAAAAGGAGAATTCAGATACAGATAAGAGTGACAATCCAGATCATAAACCAAATGGCAGTACGAACCAACACATCTAG 1521 0.4129 MASDLNSGLSKKTFVFGLKVWVLMGIIVGLFIIIILVVLSICLTLRKKSRRGNGGMHPLSHILSISEEIKEISVDQVSSNNHPQNGSFMSLNDKFSDGDSGKVLIQTKNGDNSSQSGSFNRLEKDLNGSQSGEDSGGFRSISAYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFSKDNIIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDSFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRSATEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRSLLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRRSQAGNIEVESQKENSDTDKSDNPDHKPNGSTNQHI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02844 506 Gene3D Phosphorylase Kinase; domain 1 166 259 - -
Trre3g02844 506 PANTHER OS01G0323000 PROTEIN 4 486 - -
Trre3g02844 506 FunFam Putative receptor-like serine/threonine-protein kinase 260 471 - -
Trre3g02844 506 FunFam Putative receptor-like protein kinase 166 259 - -
Trre3g02844 506 CDD STKc_IRAK 190 456 - -
Trre3g02844 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Trre3g02844 506 Pfam Protein kinase domain 185 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02844 506 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Trre3g02844 506 MobiDBLite consensus disorder prediction 440 496 - -
Trre3g02844 506 MobiDBLite consensus disorder prediction 106 140 - -
Trre3g02844 506 MobiDBLite consensus disorder prediction 440 506 - -
Trre3g02844 506 SMART serkin_6 184 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02844 506 SUPERFAMILY Protein kinase-like (PK-like) 168 464 IPR011009 -
Trre3g02844 506 Gene3D Transferase(Phosphotransferase) domain 1 260 471 - -
Trre3g02844 506 ProSiteProfiles Protein kinase domain profile. 184 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02844 Trre-Chr3 31694806 31697486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02844 17 458 Trihelix Transcription Factor Family AT1G70460 41.741 5.86e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre3g02844 Pkinase 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02844 - - gmx:732653 858.981