Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02810 ATGACTCGCGTCTATATTGGAAACCTTGATTCACGAATTTCTGAAAGGGATCTTGAAGATGAATTTCATGTTTTTGGAGTTATACGAAGTGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGATGCGCTCGATGCTATTCGTGAATTAGATGATAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAAGTGGGAGCGGAGGGGGAGGTAGAGGTGGTGGTGGTAGCGGCGGTCGTGTCGATCTGGTGGGGGTGGTTCTGATTTGA 297 0.4613 MTRVYIGNLDSRISERDLEDEFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDDKNGWRVELSHNSKSGSGGGGRGGGGSGGRVDLVGVVLI 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02810 98 CDD RRM_SRSF3_like 3 71 - -
Trre3g02810 98 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Trre3g02810 98 SMART rrm1_1 3 69 IPR000504 GO:0003723
Trre3g02810 98 MobiDBLite consensus disorder prediction 67 90 - -
Trre3g02810 98 Gene3D - 1 92 IPR012677 -
Trre3g02810 98 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 84 - -
Trre3g02810 98 SUPERFAMILY RNA-binding domain, RBD 2 88 IPR035979 GO:0003676
Trre3g02810 98 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Trre3g02810 98 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02810 Trre-Chr3 30798952 30799528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02810 2 59 Eukaryotic Initiation Factors Gene Family AT4G34110 34.921 1.35e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02810 K12896 - mtr:112419871 149.828