Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02803 ATGTCTCGACATCATACTTTAATAGATAACAAGGCATTACATGATACTTTTTTTGCCTTTTGTACTGTGCTTTCTTGTAAGGTAGTTGTGAATAGCAATGGTCAATCAACGGGATATGGTTTAGTTCGATTAGATAATGATGAGTCTGCAAAGTATGCCATTGAACAATTGGATGGCATGTTGATCAGTGATAAGAAAGTTTATGTCACGCATTTTATTCGGCGACAAGAAAGGTCAGGAAATGGATCACCTAAGTTCACAAATGTGTATTTCAAGAACCTTTCTGAAACATATATCAATGAGGACCTTAAACAACTCTTCAACATTTATGGGGTAATAACGAGTGTTGTGGTCATGAAATATGAGAATGGAAACTCTAATTGTTTTGGTTTCGTGAATTTTCAAAGCCCGGATCCAGTAGTTGTTGCAGTTGAAAGATTGAATGGGACCGCAACCAATGATGGAAAGGTTTTATTTGTCGGGAGAGCTCAGAGAAAATTCGAAAGGGAGGCTGAATTGAAAGCTAAATTTGCGCAAGCAAAGATAAAGAGATATGAGAAATTGAAAGTTTGCAAAAATTTGGCTTTCAATTCTGCCTCCCTTTCCCATTTTCTCTGA 618 0.3673 MSRHHTLIDNKALHDTFFAFCTVLSCKVVVNSNGQSTGYGLVRLDNDESAKYAIEQLDGMLISDKKVYVTHFIRRQERSGNGSPKFTNVYFKNLSETYINEDLKQLFNIYGVITSVVVMKYENGNSNCFGFVNFQSPDPVVVAVERLNGTATNDGKVLFVGRAQRKFEREAELKAKFAQAKIKRYEKLKVCKNLAFNSASLSHFL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02803 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 154 IPR000504 GO:0003723
Trre3g02803 205 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 67 IPR000504 GO:0003723
Trre3g02803 205 SMART rrm1_1 5 70 IPR000504 GO:0003723
Trre3g02803 205 SMART rrm1_1 88 161 IPR000504 GO:0003723
Trre3g02803 205 Coils Coil 168 188 - -
Trre3g02803 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
Trre3g02803 205 SUPERFAMILY RNA-binding domain, RBD 9 162 IPR035979 GO:0003676
Trre3g02803 205 PANTHER RNA BINDING PROTEIN 8 181 - -
Trre3g02803 205 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Trre3g02803 205 Gene3D - 80 191 IPR012677 -
Trre3g02803 205 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 74 IPR000504 GO:0003723
Trre3g02803 205 Gene3D - 5 71 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02803 Trre-Chr3 30554976 30555593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02803 8 189 Eukaryotic Initiation Factors Gene Family AT1G71770 52.432 2.10e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02803 K13126 - mtr:120577874 253.832