Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02799 ATGTTGATCAATGATAACAAAGTTTATGTTGGGCATTTTATTCGGCGGGAAGGAAGGTCAGGAAATGGATCACCAAAGTTCACAAATGTGTATATCAAAAACCTTTCTGAAACATATATTGATGAGGACCTTAAACAATTCTTGAACATTTATGGGGTAATAACGAGTGCTGTGGTCATGAGAGATGAGAACAGGAACTCCAAATGTTTTGGTTTCGTGAATTTCCAAAGCCCGGAATCAACAGTTGTTGCAGTTGAATGGTTGAATGGGACCACAACAAATGATGGAAAGATTTTATTTGTCGGGAGAGCTCAAAGAAAATTGGAAAGGGAGGCAGAATTGACAGCCAAGTTTGCGAGCAAACTTTCAATTTCTCATATCTTTTTATTTTTGCTTTCGCAAATTTGGCTGTCAATTCTGCTTCCCTTTCCGATTTTCTTCGAGCTCTCCCGGCAAATAAACCTTTCCATCATTGGTTGTGGTCTCATTCAACCTTTCAACTGCAACAGCTGCTGA 516 0.3915 MLINDNKVYVGHFIRREGRSGNGSPKFTNVYIKNLSETYIDEDLKQFLNIYGVITSAVVMRDENRNSKCFGFVNFQSPESTVVAVEWLNGTTTNDGKILFVGRAQRKLEREAELTAKFASKLSISHIFLFLLSQIWLSILLPFPIFFELSRQINLSIIGCGLIQPFNCNSC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02799 171 SMART rrm1_1 29 102 IPR000504 GO:0003723
Trre3g02799 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 97 IPR000504 GO:0003723
Trre3g02799 171 Gene3D - 14 117 IPR012677 -
Trre3g02799 171 PANTHER RNA BINDING PROTEIN 6 119 - -
Trre3g02799 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Trre3g02799 171 SUPERFAMILY RNA-binding domain, RBD 19 110 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02799 Trre-Chr3 30473118 30473633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02799 3 119 Eukaryotic Initiation Factors Gene Family AT1G22760 33.077 4.56e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02799 K13126 - ming:122063166 167.933