Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02792 ATGGAAGAAAAAAGTTCAACAAAGAAATTTATGGAAGATGATGAAAAGCCATCATATGATCATAACATTATCAATTCACAAAACAAGACCGATGGACCTTCTTCCTCTCATAACAATACTCAAGGATCTACTCTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTTCACATCAAATTCAAGCAAAGCCTCAAATCCAAATTGGGAAGCTCCGAGTGAAGCTTGAGGAAGAAAAGAAGGAAAATGAAAATTTGAAAGCAATGTTAAATGTGGTCAACGAGAGATGCATTGTTCTTCAAAATCGTTTACTTGTGGCAATGCATATGCATCAAATATCTTCATTGCCTCAAAATAATAACAACTTGCCGAACACAAATGGACAAAATGCGGAGAAATCAGTGTTACCTACTCGGCAGTTCTTTGACGAACCTTCATCTTCAGATTGTAGCAAAAAAGAAGTATTTGAAAACAATGAAAACAACATGGGAACAAACTTTGCATGTGAGAACATTAATGAAGGTGAAATAAATAAAAAAGTAGAGGATGAATCATCTGAGGTTGGCTGCAGGAGAGCTAGAGTGTCCATTAGGGCACGATCAGATTTTTCTTTGATGGTGGACGGGTGTCAATGGAGAAAGTACGGTCAAAAGACAGCCAAGGGCAACCCTTGTCCACGGGCCTATTATCGTTGTAGTATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAAAGATGTTTCAAAGATGAAAGTGTTTTCATCACAACTTATGAAGGGAACCACAATCATCAACTTCCACAAGCAGCAAGACCAATTGCAAATTTAATATCATCAGCACTAAACACTTTCTTTTCAAACTCATCCACAAGTTTACAATATGGCAACAATCTATCAAACACATTTCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGCTATAGCCACTTTCTCTCCATCTCCAACATGTCCTATAATTACACTTGATTTCACACTCCCTCCAAGTAATTTATTGCAATTCAAAAATCACAAACAATCATCATTGTTCCCTTTTCCATTGCAAGGTTATCCACAATCATTTGAGGGTTTTCCAAATATGATAAATAATGAAAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTATAGCAAAAGATCCTTCTCTTAAGGCAACATTATTTGCAGCTATGTCATCATTCACAAATGGAGATCCTTTAAATGTTAATAACCTTAGCCAACCTAGTAAAAGTGGTTAA 1263 0.3642 MEEKSSTKKFMEDDEKPSYDHNIINSQNKTDGPSSSHNNTQGSTLLLSLSLNNTTQLSHQIQAKPQIQIGKLRVKLEEEKKENENLKAMLNVVNERCIVLQNRLLVAMHMHQISSLPQNNNNLPNTNGQNAEKSVLPTRQFFDEPSSSDCSKKEVFENNENNMGTNFACENINEGEINKKVEDESSEVGCRRARVSIRARSDFSLMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDESVFITTYEGNHNHQLPQAARPIANLISSALNTFFSNSSTSLQYGNNLSNTFLFSSPLSPPNSNAIATFSPSPTCPIITLDFTLPPSNLLQFKNHKQSSLFPFPLQGYPQSFEGFPNMINNERKLALVDVVSEAIAKDPSLKATLFAAMSSFTNGDPLNVNNLSQPSKSG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02792 420 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g02792 420 MobiDBLite consensus disorder prediction 1 42 - -
Trre3g02792 420 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre3g02792 420 MobiDBLite consensus disorder prediction 21 42 - -
Trre3g02792 420 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g02792 420 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 62 412 IPR044810 GO:0003700
Trre3g02792 420 SUPERFAMILY WRKY DNA-binding domain 200 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g02792 420 Gene3D WRKY domain 190 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre3g02792 420 Coils Coil 69 96 - -
Trre3g02792 420 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02792 Trre-Chr3 30268867 30272567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02792 70 333 WRKY Transcription Factor Family AT4G04450 36.943 1.10e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre3g02792 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02792 - - cam:101498660 536.569