Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02790 ATGGAAAAAGATTATGAGAAACCCTACGAAGAGACTGAAAAGAAGATAAAAAGATCAAGAAGTTCGCTGTCCAACGATGAAGATGATGATCATGATGATGATGATGCTAAGATGGTGATGATGAAGAAGCAAGAAGCTCTTGTTCGAAAATCACACAAGTGCAATATTTGTGGCAAGAGTTTTAGTAATGGAAAAGCATTAGGTGGACATAGAAGATCTCACTTTCTTAAGAAGAAACCTAATAATCAATCACCAGAGCTGAAAACCCCAAGTAAACATATTAGGATTGAAAACAAAAGTGATTGGAATGGTGATGATGATGATCAGGATGAGAGTGACAATATTAGTGATAAGAAACTAAAAACAAGTGAAGGTTTATGTGAATCTAGGGTTGATAAGAAACCGAGTAATCATTCTGAAGAGCAAAAAACTTTCAACTTTGATTTGAATGAGCCATATGTTATGGAGGATTAA 474 0.346 MEKDYEKPYEETEKKIKRSRSSLSNDEDDDHDDDDAKMVMMKKQEALVRKSHKCNICGKSFSNGKALGGHRRSHFLKKKPNNQSPELKTPSKHIRIENKSDWNGDDDDQDESDNISDKKLKTSEGLCESRVDKKPSNHSEEQKTFNFDLNEPYVMED 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02790 157 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
Trre3g02790 157 Coils Coil 9 29 - -
Trre3g02790 157 MobiDBLite consensus disorder prediction 59 157 - -
Trre3g02790 157 Pfam C2H2-type zinc finger 52 74 - -
Trre3g02790 157 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 28 156 IPR044653 GO:0003700
Trre3g02790 157 FunFam Zinc finger protein 49 74 - -
Trre3g02790 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Trre3g02790 157 SMART c2h2final6 52 74 IPR013087 -
Trre3g02790 157 MobiDBLite consensus disorder prediction 1 26 - -
Trre3g02790 157 Gene3D Classic Zinc Finger 43 81 - -
Trre3g02790 157 MobiDBLite consensus disorder prediction 1 38 - -
Trre3g02790 157 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Trre3g02790 157 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02790 Trre-Chr3 30232059 30233011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02790 47 80 C2H2 Transcription Factor Family AT5G61470 41.176 1.40e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre3g02790 zf-C2H2_6 3.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02790 - - tpra:123915298 104.375