Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02789 ATGGAAAAAGATTATGAGAAACCCTATGAAGAGACTGAAAAGAAGATAAAAAGATCAAGAAGTTCGCTGTCCAACAATGAAGATGATGATCATGATGATGATGATGCTAAGATGGTGATGATGAAGAAGCAAGAAGCTCTTGTTCGAAAATCACACAAGTGCAATATTTGTGGCAAGAGTTTTAGTAATGGAAAAGCATTAGGTGGACATAGAAGATCTCACTTTCTTAAGAAGAAACCTAATAATCAATCACCAGAGCTGAAAACCCCAAGTAACCATATTAGGGTTAGTTGTTTTAATGATGATGAAGATATTAGGGTTATTAGTTGTTATATTTGCAATAAGAAGTTTCCAACCAAGAATGCTTTGTATGGTCACATGAGATCTCATCTTGGTAGGGTTTGTAAAGGAGTAAGTCCTCCTTCAAATTATCATATTCAAAATTCTTCTTCTTCAAACAATTCTAATAAAAAAGAAGATCAAGATGACGATGATGATGATGACGACGATGGTAATTTTTCTTTACCGAGATGGAAAACGAGAGATAAAAGAGGTAGAAAATGTATTGGTAGTGTTGAGGCTGCGAAAAACCTATTGCATCTTCGTCACAATGGTGAGGTTTCGGATTTGAACTCAAAGAGATCTGAATTTCCACTTCCGATTAAAAAAAGGGAATTTTTGGTTGGTGAGTCATCATCAAATGGGAATGGTAAAAAGGAGTTTGTGGTGAACAAGATTAAATTTGTTTTAAGTGGTTCATTGAAGATTGAAAACAAAAGTGATTGGAATGGTGATGATGATGATGATGATAATCAGGATGAGAGTGACAATATTAGTGATAAGAAACTAAAAATAAGTGAAGGTTTATGTGAATCTAGGGTTGATAAGAAACCAAGTAATCATTCTGAAGAGCAAAAAACTTTCAACTTTGATTTGAATGAGCCATATGTTATGGAGGATTAA 963 0.3385 MEKDYEKPYEETEKKIKRSRSSLSNNEDDDHDDDDAKMVMMKKQEALVRKSHKCNICGKSFSNGKALGGHRRSHFLKKKPNNQSPELKTPSNHIRVSCFNDDEDIRVISCYICNKKFPTKNALYGHMRSHLGRVCKGVSPPSNYHIQNSSSSNNSNKKEDQDDDDDDDDDGNFSLPRWKTRDKRGRKCIGSVEAAKNLLHLRHNGEVSDLNSKRSEFPLPIKKREFLVGESSSNGNGKKEFVVNKIKFVLSGSLKIENKSDWNGDDDDDDNQDESDNISDKKLKISEGLCESRVDKKPSNHSEEQKTFNFDLNEPYVMED 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02789 320 MobiDBLite consensus disorder prediction 259 320 - -
Trre3g02789 320 Coils Coil 9 29 - -
Trre3g02789 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 132 IPR013087 -
Trre3g02789 320 MobiDBLite consensus disorder prediction 1 27 - -
Trre3g02789 320 MobiDBLite consensus disorder prediction 141 155 - -
Trre3g02789 320 Pfam C2H2-type zinc finger 109 130 - -
Trre3g02789 320 SUPERFAMILY beta-beta-alpha zinc fingers 50 130 IPR036236 -
Trre3g02789 320 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 28 83 IPR044653 GO:0003700
Trre3g02789 320 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Trre3g02789 320 SMART c2h2final6 52 74 IPR013087 -
Trre3g02789 320 SMART c2h2final6 108 130 IPR013087 -
Trre3g02789 320 Pfam C2H2-type zinc finger 52 74 - -
Trre3g02789 320 MobiDBLite consensus disorder prediction 275 308 - -
Trre3g02789 320 MobiDBLite consensus disorder prediction 1 38 - -
Trre3g02789 320 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Trre3g02789 320 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Trre3g02789 320 Gene3D Classic Zinc Finger 29 103 - -
Trre3g02789 320 Gene3D Classic Zinc Finger 104 171 - -
Trre3g02789 320 MobiDBLite consensus disorder prediction 138 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02789 Trre-Chr3 30229457 30230419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02789 49 141 C2H2 Transcription Factor Family AT2G26940 30.841 7.65e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre3g02789 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02789 - - tpra:123915298 410.994