Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02766 ATGGGTCGTGGAAAAGTAACTCTAAAATACATTCAAAATGAGAAAGATCGAAAAATATCATTCGGTCAGAGAATTGAGGGATTAACAAAGAAAGTTTCCAAATTTTCTAGCAATTTTGAGGTGGAATCTTGCTTAATTGTTTATGATGGTGATAATAGACTAATGACTTGGCCACAAAACTCTACAAATGTACAAACCATGCTTAAAAAATATGAGCATCAAAAGATTGAGACGACTCCAAAGAAATTTGACGTGGGAGACTATTTTGCGATTAAGAAAACTATAGCTGAAGACAAGATTACTAGAGTGCGCAAAGAGATTGCGATGAACAAGTATCCAACTTGGGGTGAATTTTTTCAAGGCATGGGGGAGGAGCAACTCAACGTCTGCCTTGGTATGGTAGGTAGTAAGATTAAAGCTTGTAATCAAAGAATTAACATGCTAAAAAATGTGCAACAAAGTGAAAGTATCTCTACTCACATCATGGATGAACAAGAGAAAATTGATGTCATGCACAACATTCCTATGAAGCCGATTAATGAGATGGTGGATTTAACAAATCATGTTTTGTCAACAAACAAACATGAGGAATGGTATAATCAGCTTTTCAGGTTAGATGATTGGGTTAAGGAACTACATAATGATTATATTAATGAGATAATTCACTATACTAATGATGTTGATGTGCAACAAGGTGAAATTAGTTTCATGCTAAACACTGCTCCGGGGAATGTTATATTATCACATAACATTCCCGAAAAGCAACATATTCTTGATAATCCTATAAAGCATGATGTGAATTTCATTAATGTTGATGTGCCTCATGTTTCCTCGAAAAACCAAGTTGATGAACTCGTTGTGTTGAATAGTCTAGTGGCCGAGGCCGCCAAGCCTATGGATGAGGATAATGAAGTTATAGATTTTGATGATGATGTCAATTGGGTTAGTCAACCTGACGTGTTTGCGAAGCAAGGCCTTTCTCTTTTGTCCAAGAATCAACAACACATTGAAACAATGGGAGTTGGACAACATTGA 1035 0.3594 MGRGKVTLKYIQNEKDRKISFGQRIEGLTKKVSKFSSNFEVESCLIVYDGDNRLMTWPQNSTNVQTMLKKYEHQKIETTPKKFDVGDYFAIKKTIAEDKITRVRKEIAMNKYPTWGEFFQGMGEEQLNVCLGMVGSKIKACNQRINMLKNVQQSESISTHIMDEQEKIDVMHNIPMKPINEMVDLTNHVLSTNKHEEWYNQLFRLDDWVKELHNDYINEIIHYTNDVDVQQGEISFMLNTAPGNVILSHNIPEKQHILDNPIKHDVNFINVDVPHVSSKNQVDELVVLNSLVAEAAKPMDEDNEVIDFDDDVNWVSQPDVFAKQGLSLLSKNQQHIETMGVGQH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02766 344 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Trre3g02766 344 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Trre3g02766 344 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre3g02766 344 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre3g02766 344 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02766 Trre-Chr3 29762617 29763651 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02766 1 115 Type I MADS-box Gene Family AT5G55690 33.607 3.62e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre3g02766 SRF-TF 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02766 - - tpra:123922587 212.231