Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02760 ATGGATGGTGTCGCTGTCAAGGTTGAGCCAGAGCAGTTTACAGTTCTAGAATCTTCTCCTATTGCTGTTGAGAATCATGTTGATTGTGTTGATGGTGTTAGTTCCAACATGGGTGATGGATCAATGATGAATTCCTCAGCAAACAAATCCATGCCAGCATCTGGAATGAACGCGGTGGTTCCTAATACAAGTCAGCTTACCATCTTCTATAATGGGAGCATTTGTATCTATGATGGAATACCTGCAGAAAAGGTGCAGGAAATAATGCTCATGGCTGCTGGTGCTGCCAAGTCTACTGAAACGAAGAAGATTGTGAAACAATCTCCCGTGCCTTCACCGGCTCCAACAAGGCCTTCTTCTCCACATGGAACCACTGATAATATTGCTTCACAGCAGGGACTCTGCTATCCTGCAAAGAAAAGTTCCATCTGCAGGCTGCAAGAATTTCCAATAGCACGCAGGCATTCACTTCAAATGTTTCTTCAGAAGCGGCGAGACAGGTTGGGTAGTAAAGCACCTTATCCTTCCTCCCCAACAACAAAGGTGGCTGACAACATAGAGAACAACTTCTGTTCCGAGAATTCGCCAGATTCAGTTTCAATGAAGGGACCAAAGGAGGAATTTCAGCCAACTATATCTACCTCTTGA 648 0.4475 MDGVAVKVEPEQFTVLESSPIAVENHVDCVDGVSSNMGDGSMMNSSANKSMPASGMNAVVPNTSQLTIFYNGSICIYDGIPAEKVQEIMLMAAGAAKSTETKKIVKQSPVPSPAPTRPSSPHGTTDNIASQQGLCYPAKKSSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPTTKVADNIENNFCSENSPDSVSMKGPKEEFQPTISTS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02760 215 Pfam Jas motif 150 174 IPR018467 -
Trre3g02760 215 MobiDBLite consensus disorder prediction 100 129 - -
Trre3g02760 215 SMART tify_2 59 94 IPR010399 -
Trre3g02760 215 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 44 183 IPR040390 -
Trre3g02760 215 MobiDBLite consensus disorder prediction 168 215 - -
Trre3g02760 215 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Trre3g02760 215 Pfam tify domain 61 93 IPR010399 -
Trre3g02760 215 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02760 Trre-Chr3 29726267 29730562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02760 31 177 Tify Gene Family AT5G20900 45.695 1.61e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre3g02760 tify 6.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02760 K13464 - gmx:100306045 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05058 15 60368099 60370351 Trre3g02760 3 29726267 29730562 PCT