Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02738 ATGGGAACTCCATCAAACAACTCTTCCTCACACAACCTTCTCATAACCATAACCGTTTTCACCGTTACCGTCACAGTTTTCTTAACTCTCTACCTCATTCTCCGTTACCGTTGCAATTGCCTCCGTCGCCGTTTCTCTCCGTCATCCTCCACAGTTTTCTCCTCCCCTTCGGGAAATCGAGTTTCACCGGAAACGACGACTTCATCTTCCGTCGTCGATTCTCTCCCGCTATTCACATTCTCTTCCATCACACGCCGTTCTTCCTCCGTCGTCTCACGCGACTGCGCCGTTTGTTTGTCGAAATTTGAGCAAACCGACCTCCTCCGTCTCCTCCCTCTCTGCTGTCACGCCTTCCACACCGAATGCATTGACGCTTGGCTCCGTTCGAATCTCACGTGTCCGCTTTGCCGATCAGCCGTCGTCGTTTCGGAGTCCGAGCTTACGAAGATTTTCCGGCCGTCTTCCGCGTCTTCCGGAAACAGCTTCCGTTTGGAGATAGGAAACATCAGTAACCGCCGTGGAGCCGGAACCGCCGCAACTGACAATGTCAGTGGAGAAACTGATCGGAGATCGTACTCCGTCGGTGCGTTTGAGTATTTCGTTGACGAGGAAGCTGAGATTCCATTTGGCAACACTAATCGGAGAATTTTTTCCGGCGAGAAAGATGATTCACCGGCGGTGGGGGTTCCGGTAGTTTCTCAAGCGAGTTTGGTTGGTGAAGGTAGCTGGTTGAAGGATTATGTTGATAATCTTTCGAATTTGGTTTCATTCGGAGGTTCTGGAAGGTTCTTTACTGGAAGCAGTAGACAAAACGACGTCGTTAGTGATATTGAAGTTCAAAATAATAATGGTTTTGGGGAAGAAATTAGCGAGATGTTTAGATGGATTTCAGGAGTTTGA 900 0.4911 MGTPSNNSSSHNLLITITVFTVTVTVFLTLYLILRYRCNCLRRRFSPSSSTVFSSPSGNRVSPETTTSSSVVDSLPLFTFSSITRRSSSVVSRDCAVCLSKFEQTDLLRLLPLCCHAFHTECIDAWLRSNLTCPLCRSAVVVSESELTKIFRPSSASSGNSFRLEIGNISNRRGAGTAATDNVSGETDRRSYSVGAFEYFVDEEAEIPFGNTNRRIFSGEKDDSPAVGVPVVSQASLVGEGSWLKDYVDNLSNLVSFGGSGRFFTGSSRQNDVVSDIEVQNNNGFGEEISEMFRWISGV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02738 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 207 - -
Trre3g02738 299 CDD RING-H2_EL5-like 94 137 - -
Trre3g02738 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 142 IPR013083 -
Trre3g02738 299 MobiDBLite consensus disorder prediction 46 68 - -
Trre3g02738 299 FunFam E3 ubiquitin-protein ligase ATL6 58 143 - -
Trre3g02738 299 SUPERFAMILY RING/U-box 72 143 - -
Trre3g02738 299 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Trre3g02738 299 SMART ring_2 95 136 IPR001841 -
Trre3g02738 299 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02738 Trre-Chr3 29158761 29159660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02738 70 191 C3H Transcription Factor Family AT3G18930 40.000 5.74e-22 93.2