Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02719 ATGTTGCAATTTCAGGGTGTTTCAAGACATTGCAATCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAACAAAAACAGAAGCAGAAGCAAGATGATGTTTCGGAGGGTCAATTTTCGTCATACCCCTTTCCCGAGCTTTCTTCGTCCGGGCGTCTCGAGGTTAAAGTATTGATTAAACCTACTTACGATGAACTTGGTCGAGTTCTAGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGGGAAATTGGGTCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCCAAGGGCGAAAAATTGGCCGAGGCACTCCATTCCGAGGGAGTACCTTACACTATATACTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAAAGTACATCCAGCCATACATTGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGCAAAACAATGTCGTATCGCATAACAGCGGGAAGGGTGGTGGTAAGCTTGGGCCGCAAATTCTTGGGGAACCTCCTAACATAGAAATTGGTCCATGTGAAGCAAACACGAAGGAAGAAGAAGAAGAAGATTCCCCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGATTACGAGATTTCTTGTTTGTGGATTTCCCTGCACATTGGACGCATGCTTATTGGGGTCGTTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCGCCACCTCTCCAGGCAGGAACATTCTCGCGTGGTGTGGTGACCATGCGGTGTGATATATCCACAAGTAGTTCTGCTCATATATCACTTTTAGTGTCTGGTAGTGCCGACGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAACTCACCGAGAATAGTCAACTTGTTCAGGCAATTCCTAGTCATGAACAAAACAAATTGCCTTCGTACGAACCTCGAAGATCAGCCTCAGTAGCCTGTGGATCCAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCACCGAATGTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTTCTGTGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTCACCCTAGTTGGTTGATGCCTCCAGCACCTAGTCGAAAAAGATCTGAACCATGCTCTAGAATAAAATCTATTAATACTAGTGGCGTTCAAGATATTGGCAATGATAGACAGAAATTAAGTTTTGGTGCCATGAGGCCAATCCCTCAGTCTCATCGTCAAAAGCTTCTCCCTTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCACGGAAAATCAAATCAACTACTTCCTCCAATTAAGCACAATGGTTTAGGTCCCCATTCTGTTACAAACAGAAAATCTGTATCAAACGCTTTTCAAGCTCACCAAATAATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGATAGAGCTCCGATACGAGTTTGCTCGGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGGCATACTCGCCTCATTCCACAAGGCGGTTTTGCCGAGTTCCCTGATGCCGTTCTGAATGCTAAACGTCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGGCATTATGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTTTATGTGGTGAGTGGGCTCATTTTGGTTGCGATAGGCGGCAGGGACTCGGAGCATTCAAGGACTATGCGAAAACTGACGGGCTCGAATACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGCTACTAA 2262 0.424 MLQFQGVSRHCNLLAVLSGKSHDSKQKQKQKQDDVSEGQFSSYPFPELSSSGRLEVKVLIKPTYDELGRVLEQLQPDFVYLQGQQLDDRGEIGSLVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTLDAFQLAQASFRLYCAQNNVVSHNSGKGGGKLGPQILGEPPNIEIGPCEANTKEEEEEDSPETSSSIKIYDDDVITRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLMPPAPSRKRSEPCSRIKSINTSGVQDIGNDRQKLSFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLPPIKHNGLGPHSVTNRKSVSNAFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTTNGY 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02719 753 ProSiteProfiles ARID domain profile. 576 680 IPR001606 GO:0003677
Trre3g02719 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 680 743 IPR013083 -
Trre3g02719 753 MobiDBLite consensus disorder prediction 22 46 - -
Trre3g02719 753 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 753 IPR042293 -
Trre3g02719 753 SUPERFAMILY FYVE/PHD zinc finger 679 742 IPR011011 -
Trre3g02719 753 MobiDBLite consensus disorder prediction 217 238 - -
Trre3g02719 753 SMART ARID_2 573 676 - -
Trre3g02719 753 Gene3D - 574 679 IPR036431 GO:0003677
Trre3g02719 753 Pfam ARID/BRIGHT DNA binding domain 579 676 IPR001606 GO:0003677
Trre3g02719 753 SMART bright_3 577 681 IPR001606 GO:0003677
Trre3g02719 753 SUPERFAMILY ARID-like 577 691 IPR036431 GO:0003677
Trre3g02719 753 CDD PHD_ARID4_like 686 737 - -
Trre3g02719 753 CDD ARID 578 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02719 Trre-Chr3 28858451 28864289 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02719 1 752 ARID Transcription Factor Family AT3G43240 63.974 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre3g02719 ARID 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02719 - - tpra:123911371 1459.12