Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02718 ATGATGTTGCAATTTCAGGGTGTTTCAAGACATTGCAATCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAACAAAAACAGAAGCAGAAGCAAGATGATGTTTCGGAGGGTCAATTTTCGTCATACCCCTTTCCCGAGCTTTCTTCGTCCGGGCGTCTCGAGGTTAAAGTATTGATTAAACCTACTTACGATGAACTTGGTCGAGTTCTAGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGGGAAATTGGGTCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCCAAGGGCGAAAAATTGGCCGAGGCACTCCATTCCGAGGGAGTACCTTACACTATATACTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAAAGTACATCCAGCCATACATTGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGCAAAACAATGTCGTATCGCATAACAGCGGGAAGGGTGGTGGTAAGCTTGGGCCGCAAATTCTTGGGGAACCTCCTAACATAGAAATTGGTCCATGTGAAGCAAACACGAAGGAAGAAGAAGAAGAAGATTCCCCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGATTACGAGATTTCTTGTTTGTGGATTTCCCTGCACATTGGACGCATGCTTATTGGGGTCGTTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCGCCACCTCTCCAGGCAGGAACATTCTCGCGTGGTGTGGTGACCATGCGGTGTGATATATCCACAAGTAGTTCTGCTCATATATCACTTTTAGTGTCTGGTAGTGCCGACGCTTGTTTTAATGATCAGGTATCGCTTTTGGAGAATCATATTAAAAAAGAACTCACCGAGAATAGTCAACTTGTTCAGGCAATTCCTAGTCATGAACAAAACAAATTGCCTTCGTACGAACCTCGAAGATCAGCCTCAGTAGCCTGTGGATCCAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCACCGAATGTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTTCTGTGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTCACCCTAGTTGGTTGATGCCTCCAGCACCTAGTCGAAAAAGATCTGAACCATGCTCTAGAATAAAATCTATTAATACTAGTGGCGTTCAAGATATTGGCAATGATAGACAGAAATTAAGTTTTGGTGCCATGAGGCCAATCCCTCAGTCTCATCGTCAAAAGCTTCTCCCTTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCACGGAAAATCAAATCAACTACTTCCTCCAATTAAGCACAATGGTTTAGGTCCCCATTCTGTTACAAACAGAAAATCTGTATCAAACGCTTTTCAAGCTCACCAAATAATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGATAGAGCTCCGATACGAGTTTGCTCGGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGGCATACTCGCCTCATTCCACAAGGCGGTTTTGCCGAGTTCCCTGATGCCGTTCTGAATGCTAAACGTCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGGCATTATGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTTTATGTGGTGAGTGGGCTCATTTTGGTTGCGATAGGCGGCAGGGACTCGGAGCATTCAAGGACTATGCGAAAACTGACGGGCTCGAATACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGCTACTAA 2271 0.424 MMLQFQGVSRHCNLLAVLSGKSHDSKQKQKQKQDDVSEGQFSSYPFPELSSSGRLEVKVLIKPTYDELGRVLEQLQPDFVYLQGQQLDDRGEIGSLVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTLDAFQLAQASFRLYCAQNNVVSHNSGKGGGKLGPQILGEPPNIEIGPCEANTKEEEEEDSPETSSSIKIYDDDVITRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQVSLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLMPPAPSRKRSEPCSRIKSINTSGVQDIGNDRQKLSFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLPPIKHNGLGPHSVTNRKSVSNAFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTTNGY 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02718 756 CDD PHD_ARID4_like 689 740 - -
Trre3g02718 756 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 756 IPR042293 -
Trre3g02718 756 MobiDBLite consensus disorder prediction 218 239 - -
Trre3g02718 756 CDD ARID 581 679 - -
Trre3g02718 756 ProSiteProfiles ARID domain profile. 579 683 IPR001606 GO:0003677
Trre3g02718 756 Pfam ARID/BRIGHT DNA binding domain 582 679 IPR001606 GO:0003677
Trre3g02718 756 MobiDBLite consensus disorder prediction 23 47 - -
Trre3g02718 756 SMART bright_3 580 684 IPR001606 GO:0003677
Trre3g02718 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 746 IPR013083 -
Trre3g02718 756 SMART ARID_2 576 679 - -
Trre3g02718 756 SUPERFAMILY FYVE/PHD zinc finger 682 745 IPR011011 -
Trre3g02718 756 SUPERFAMILY ARID-like 580 694 IPR036431 GO:0003677
Trre3g02718 756 Gene3D - 577 682 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02718 Trre-Chr3 28858451 28864292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02718 2 755 ARID Transcription Factor Family AT3G43240 63.804 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre3g02718 ARID 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02718 - - tpra:123911371 1454.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02718 3 28858451 28864292 Trre3g02718 3 28858451 28864292 ECH