Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02715 ATGAAACAGAAAAAAACAAGAACAAGGAACAGAGTTCCACGTATCGACTCCTCCGGATTTTTTCGCAAGCGAAAAATCTCCGACGAGTATGATTTTTCCGATAAAGACGAGGGCTACATGAAGATCTTCAAATATCCCCTTTTGGAAAATCCTAAAAGAAAGAACTTTAAAAATGGAGAGTCTTCAAATTCAAAATACAAGCAATTTTATTGCAAAATCTGCACGGATATTAAAACTATGGGGGAAGCTTTCTACATCAGCGGTTGCTCTCACACTTATTGCTCCGATTGTGTGGCGAAGCACATCCATTACAAACTTGACAATAACATTATTAACATTAGGTGTCCTGCTTTCGAGTGCAGAGGTTCGTTAGAACTAGAGTTTTGCCGTTCGATTCTTCCAACCGAGGATTTTAAACGATGGAATAAGGCCGTCTGCGAGGTTCTGTTCAATATTACGGAGAAATTCTATTGTCCCTTTGCAGACTGTTCGGCTCTTTTGATCAATGACCGAACCGAGGCTGTGAGGAATTTAGAATGTCCTAATTGTAATAGGATGCTCTGTGGACAATGTAAGGTTCGATGGCATGAAGGAATCGAATGCAGCGAATTCAAGAAACTGAAGCGGGACGATAAGGGGAAAGATGTTATGATGACGAACATTGCGAAAGATATGCATTGGAGGCAATGTCCAAAGTGCAGATTTTATGTTGCCAAATCTGAGAGCAGCAACATCATGAGATGCAGGTGTAAATGTAGATTTTGTTACAATTGTGGAGATGTCTTCTCCACTGGCAGGTGTAACTGTTATAAGAGGAATTCCATTTATTCAGATCAACGACCGAAACATATTCGCCCAAGAGTTTCTAGTTCTAGGGAAAAAGTTTCCACCAATGAAACTTTTCCGAGTAAGGAAACCCTATTATTGGCTCAAGAACTGAACAAAATTTTAAATGATTATATTATCCGGTTCACTAGTTGA 981 0.3945 MKQKKTRTRNRVPRIDSSGFFRKRKISDEYDFSDKDEGYMKIFKYPLLENPKRKNFKNGESSNSKYKQFYCKICTDIKTMGEAFYISGCSHTYCSDCVAKHIHYKLDNNIINIRCPAFECRGSLELEFCRSILPTEDFKRWNKAVCEVLFNITEKFYCPFADCSALLINDRTEAVRNLECPNCNRMLCGQCKVRWHEGIECSEFKKLKRDDKGKDVMMTNIAKDMHWRQCPKCRFYVAKSESSNIMRCRCKCRFCYNCGDVFSTGRCNCYKRNSIYSDQRPKHIRPRVSSSREKVSTNETFPSKETLLLAQELNKILNDYIIRFTS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02715 326 SUPERFAMILY RING/U-box 142 206 - -
Trre3g02715 326 Pfam IBR domain, a half RING-finger domain 154 201 IPR002867 GO:0008270
Trre3g02715 326 CDD Rcat_RBR_unk 226 260 - -
Trre3g02715 326 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 56 275 IPR031127 GO:0004842|GO:0016567
Trre3g02715 326 ProSitePatterns Zinc finger RING-type signature. 89 98 IPR017907 -
Trre3g02715 326 SMART ibrneu5 139 201 IPR002867 GO:0008270
Trre3g02715 326 ProSiteProfiles Zinc finger RING-type profile. 71 116 IPR001841 -
Trre3g02715 326 ProSiteProfiles TRIAD supradomain profile. 67 282 IPR044066 -
Trre3g02715 326 SUPERFAMILY RING/U-box 214 270 - -
Trre3g02715 326 Gene3D - 198 320 - -
Trre3g02715 326 SUPERFAMILY RING/U-box 67 148 - -
Trre3g02715 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Trre3g02715 326 FunFam RBR-type E3 ubiquitin transferase 66 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02715 Trre-Chr3 28831819 28834359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02715 71 259 C3H Transcription Factor Family AT2G19610 27.638 1.03e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02715 K11975 - csav:115705079 259.61