Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02714 ATGGATCGAAAGAGAAGAAGAAGTAACAGAGTTCCATATTCCAAAGGCATGAAGAAGTTCCTCAATTTCATTCCCAAAAAAATCCCTATGAAAAAACGTAAAAGAGACAACTATTCTGATAAGGTAGGCTCTTCAATGTCAAAAAATACGGAGTTTGATTGCAAAATCTGCAGGGAAACTAAAACGATGGACGACGCTTTCTACCTCAGCGGTTGCTCTCACTCTTATTGCTCCGATTGTGTTGTGTCGTACATCCGATACAAGCTTGAACATAAAATTATTAACATTATGTGTCCTGTTCCTGGTTGCCGTGGTTGGTTTGAACCGGAGTTTTGTCGTTCAATTCTTCCTACCGAGGTTTTTGAACGGTGGGACAAGGCGTTGTGCGAGGATTTGTTCAATGTTAGGGAGAAATTCTACTGTCCCTTTGCTGATTGTTCTGCTCTTTTGATCAATGACGGAAAGGAGGCTGTCGGTAAGTTAGAATGTCCAAATTGTAATAGGAAGATTTGTGCACAATGTAAGGTTCGTTGGCACGAAGGAATCGAATGCAAGGAGTTCAAGAAACTGAACCCAGGCGATAAGGGGAAAGATGTTATGCTGACAAAATTTGCGAAAAATATGAGGTGGAGGCAATGTCCTAAGTGCAAATTTTATGTTGCCAAATCTAATAACAGCAACATCATGAAATGCAGGTGCCATTGTAAATTTTGTTACAAATGTGGAGGCGCCTACTCTAATGGCAAGTGCAAGTTGTGCAACTGTTATAAGAGGAAATTCGTTTACCCAGCTCAACCAACTTTCTCAAATAAGGACTGCATCATTTGGGCTCAACAACTTAAAGATATTCTCGAGAGTGAATTTTTCACTGATTGA 876 0.4007 MDRKRRRSNRVPYSKGMKKFLNFIPKKIPMKKRKRDNYSDKVGSSMSKNTEFDCKICRETKTMDDAFYLSGCSHSYCSDCVVSYIRYKLEHKIINIMCPVPGCRGWFEPEFCRSILPTEVFERWDKALCEDLFNVREKFYCPFADCSALLINDGKEAVGKLECPNCNRKICAQCKVRWHEGIECKEFKKLNPGDKGKDVMLTKFAKNMRWRQCPKCKFYVAKSNNSNIMKCRCHCKFCYKCGGAYSNGKCKLCNCYKRKFVYPAQPTFSNKDCIIWAQQLKDILESEFFTD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02714 291 SMART ring_2 213 253 IPR001841 -
Trre3g02714 291 SMART ring_2 54 101 IPR001841 -
Trre3g02714 291 ProSiteProfiles TRIAD supradomain profile. 50 259 IPR044066 -
Trre3g02714 291 FunFam RBR-type E3 ubiquitin transferase 49 135 - -
Trre3g02714 291 Pfam Zinc finger, C3HC4 type (RING finger) 54 99 IPR018957 GO:0046872
Trre3g02714 291 SMART ibrneu5 122 184 IPR002867 GO:0008270
Trre3g02714 291 SMART ibrneu5 194 250 IPR002867 GO:0008270
Trre3g02714 291 Pfam IBR domain, a half RING-finger domain 124 184 IPR002867 GO:0008270
Trre3g02714 291 Gene3D - 181 272 - -
Trre3g02714 291 SUPERFAMILY RING/U-box 198 258 - -
Trre3g02714 291 SUPERFAMILY RING/U-box 128 189 - -
Trre3g02714 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 135 IPR013083 -
Trre3g02714 291 SUPERFAMILY RING/U-box 49 135 - -
Trre3g02714 291 ProSiteProfiles Zinc finger RING-type profile. 54 100 IPR001841 -
Trre3g02714 291 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 258 IPR031127 GO:0004842|GO:0016567
Trre3g02714 291 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02714 Trre-Chr3 28816182 28818306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02714 49 243 C3H Transcription Factor Family AT2G19610 28.019 6.16e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02714 K11975 - mnt:21402499 262.307