Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02713 ATGGGTATAGAGAAAAGAACCAGTTTCCCACGCCTCGAATCCTTCCACTTATCCGGCAAGCGAAATATCTCCGATGTCGTTGATCTTTCCGATGAAGACTTTTCCGAGGAAGACAACGACATTAAGATCTTCAATTTCTTTCCAAAAATTACCTGTTTCGGAACCCGTAAAAGAAACAACAACTCTGGAAAAGGAGAGTATTCATATTCGAAAGGCAGGCCGTTTATTTGCGACCTCTGCCTGGATAAAAAAACGGGCAGGGACGCTTTCTACATCAGCGGTTGCCATCACTTTTATTGCTCCGATTGCGTGGCAAAGCACATCCTTTCCGAACTTGATGATAACAATATTAACATTAGGTGTCCTGCTTTCGGGTGTAGAGGTACTTTAGAAGCAGAATTTTGTCGTTCGATTCTTCCAACCGAGGATTTTAAACGATGGAATAAGGCGGTGTGCGAGGTTTTGTTCAATATTAAGGAGAAATTTTATTGTCCTTTTCCAGACTGTTCTGCTCTTTTGATCAATAACAGAACGAAGGCGGTTAAGAATTTAGAATGTCCTAATTGTAATAGGATGATCTGTGGACTGTGTAAAGTTCGATCGCATGAAGGAATCGAATGCAGCGAGTTCAAGAAACTGATGCGGGACGATAAGGGAAAAGATGTTGTGCTGGCGAACATTGCGGATGATACGAGGTGGAGACAATGTCCCAAGTGCAGTATTTATGTTGCCAAATCTGGGGGCTGCAGCATCATGGAGTGCAGGTCTTGTTGTAGATTTTGTTACACATGTGGAAGTGTCTACCCTACTGGCATGTGCAACTGTTATAAGAGAAATTCCATTTTTCTGCGTCAAATTCGCTCCAAAGGTTTTATGGGTAGAGTTTTCACTAGTAGAATTTTCCCAAAGAAGAACCCTATCCATTTGGATTGA 933 0.4202 MGIEKRTSFPRLESFHLSGKRNISDVVDLSDEDFSEEDNDIKIFNFFPKITCFGTRKRNNNSGKGEYSYSKGRPFICDLCLDKKTGRDAFYISGCHHFYCSDCVAKHILSELDDNNINIRCPAFGCRGTLEAEFCRSILPTEDFKRWNKAVCEVLFNIKEKFYCPFPDCSALLINNRTKAVKNLECPNCNRMICGLCKVRSHEGIECSEFKKLMRDDKGKDVVLANIADDTRWRQCPKCSIYVAKSGGCSIMECRSCCRFCYTCGSVYPTGMCNCYKRNSIFLRQIRSKGFMGRVFTSRIFPKKNPIHLD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02713 310 Pfam IBR domain, a half RING-finger domain 159 207 IPR002867 GO:0008270
Trre3g02713 310 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 268 IPR031127 GO:0004842|GO:0016567
Trre3g02713 310 SUPERFAMILY RING/U-box 73 154 - -
Trre3g02713 310 SUPERFAMILY RING/U-box 222 275 - -
Trre3g02713 310 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Trre3g02713 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Trre3g02713 310 SMART ibrneu5 145 207 IPR002867 GO:0008270
Trre3g02713 310 SUPERFAMILY RING/U-box 148 212 - -
Trre3g02713 310 ProSiteProfiles TRIAD supradomain profile. 73 289 IPR044066 -
Trre3g02713 310 ProSiteProfiles Zinc finger RING-type profile. 77 122 IPR001841 -
Trre3g02713 310 FunFam RBR-type E3 ubiquitin transferase 72 158 - -
Trre3g02713 310 Gene3D - 204 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02713 Trre-Chr3 28809599 28811336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02713 77 266 C3H Transcription Factor Family AT2G19610 31.000 1.45e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02713 K11975 - gmx:100803898 260.381