Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02712 ATGGAGGAGGCGACGATTATCAATATAGAAGAAGGAAATTCTTCAAATTCAGAAAACATGCTTTTTGTTTGTGAAATCTGCACAGACACTAAAACAATGAGAGAAGCTTTCTACATCAACCGTTGCTCTCATGCTTATTGCTCCCATTGTGTAGCCATGTACATCAGTTCCAAACTCGAAGATAACATCACCAACATTATGTGTCCTATTCTCGGGTGCAGTGGTTCGTTAGATGTTGAGTATTGCCGTTCGATTCTTCCGGTTGGGGTTTTTGAACGGTGGGGTAATGCGTTATGTGAGATTTCAATCGATGTATCGGAGAAATTCTATTGTCCTTTTCCAGACTGTTCTGCTCTTTTGATCAACGACGGAACAGAGATTGTTAGGAAAATAGAATGTCCTAATTGTAATAGGATGTTCTGTGTACAATGTAAGGCTCCATGGCATGAAGGAATCGAATGCAGAGAGTTCGAGAAGTTAAATGCAGATGAGAGGAACAAAGAAGCTTATATGTTGATGAACCTTGCGAAAAATATGGCATGGAAGCGATGCCCTAAATGCAAATTTTATGTTGCCAAATCTGCAGGTTGCAACGGAATGATATGCAGGTGTGGTTGCAGTTTTTGTTACGGATGTGGAGGTGCCTTCGTTGCCGGCAGATGCATATGCGGTCGACACCCTGATCAATGTTGTGGTTGTTTAATTCTTGTCATTCTTTTGTTTTTATTCACATATTTTTTTTGTTATCGTTAA 753 0.3997 MEEATIINIEEGNSSNSENMLFVCEICTDTKTMREAFYINRCSHAYCSHCVAMYISSKLEDNITNIMCPILGCSGSLDVEYCRSILPVGVFERWGNALCEISIDVSEKFYCPFPDCSALLINDGTEIVRKIECPNCNRMFCVQCKAPWHEGIECREFEKLNADERNKEAYMLMNLAKNMAWKRCPKCKFYVAKSAGCNGMICRCGCSFCYGCGGAFVAGRCICGRHPDQCCGCLILVILLFLFTYFFCYR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02712 250 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Trre3g02712 250 Pfam IBR domain, a half RING-finger domain 107 154 IPR002867 GO:0008270
Trre3g02712 250 Gene3D - 109 156 - -
Trre3g02712 250 SMART ibrneu5 164 231 IPR002867 GO:0008270
Trre3g02712 250 SMART ibrneu5 92 154 IPR002867 GO:0008270
Trre3g02712 250 ProSiteProfiles TRIAD supradomain profile. 20 237 IPR044066 -
Trre3g02712 250 SUPERFAMILY RING/U-box 106 159 - -
Trre3g02712 250 CDD Rcat_RBR_unk 181 213 - -
Trre3g02712 250 ProSiteProfiles Zinc finger RING-type profile. 24 70 IPR001841 -
Trre3g02712 250 Gene3D - 157 233 - -
Trre3g02712 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 103 IPR013083 -
Trre3g02712 250 SUPERFAMILY RING/U-box 21 101 - -
Trre3g02712 250 FunFam RBR-type E3 ubiquitin transferase 19 105 - -
Trre3g02712 250 SUPERFAMILY RING/U-box 167 217 - -
Trre3g02712 250 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 219 IPR031127 GO:0004842|GO:0016567
Trre3g02712 250 CDD BRcat_RBR_unk 105 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02712 Trre-Chr3 28802326 28806364 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02712 24 214 C3H Transcription Factor Family AT2G19610 29.064 7.78e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02712 K11975 - csav:115705079 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02712 3 28802326 28806364 Trre3g02712 3 28802326 28806364 ECH