Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02710 ATGGGTTTTGAGACATTCCACCTTCCAAGTAGAAAAAGAAGAAACAGAGTTCCACATTCCACACCAGAGGTAATCGACCTCGACTCCTACCACTTCTCCGGTAAGCGACCCATCTCCGACATCATTGATCTTTCCGATGAAGACGATGACGACGAAGTCAAGATCCTTAATTTCATTCCCAAAACTACCCCTTTGGTGAAAAGTAAAAGAAACAACAACACTGAAAAAGGAGAGTCTTCAAATTCCAAAAACACACCATTTGTTTGCGAAATCTGCACGGACACTAAAACAATGAGGGACGCTTTCTACATCAGCGGTTGCTCTCACGCTTATTGCTCCGATTGTGTGGCGATGTACATCGGTTCCAAACTTGATGATAACATCACCAACATTGGGTGTCCTGTTCCCGGGTGCAGTGGTTTATTAGAAGCGGAGTTTTGCCGTTCAATTCTTACTCCTGATGTCTTCGAACGGTGGGGTAAGGCATTGTGCGAGGCATTGTTCGATGTTACGGAGAAATTCTATTGTCCTTTTGCAGACTGTTCTGCTCTTTTGATCAATGACAGAATGGAGGCTGTTAAGAATTCCGAATGTCCTAACTGTAATAGGATGTTTTGTGCACAATGTAGGGTTCCGTGGCATGATGGAATCAAATGCAGCGAGTTTGAGAAGCTGAATGCGGACGAGAGAGGGAGAGAAGATGTTATGTTTATGAACCTCGCGAAGGATATGCAATGGAGACGATGTCCTAGGTGCAGAATTTTTGTTGCCAAATCTATGGGCTGCAACGTCATGTCCTGCAGGTGTCGTTGTGTATTTTGTTACGCATGTGGAGGTGAATACTCATTTGGTCGTTGTAATTGTTATAAGATGAGTCTGAGCAACATTTATTCAAATCAACGACAAGAACAAATTCAATCTAGAGTTTTCAGAGGAGGAGTATTTCCGGGCTCAACGACCAGAAATCATTCTAACCGGAGATTCTACCGCTGGAACAAACATTCTCGAGAATAA 1014 0.4329 MGFETFHLPSRKRRNRVPHSTPEVIDLDSYHFSGKRPISDIIDLSDEDDDDEVKILNFIPKTTPLVKSKRNNNTEKGESSNSKNTPFVCEICTDTKTMRDAFYISGCSHAYCSDCVAMYIGSKLDDNITNIGCPVPGCSGLLEAEFCRSILTPDVFERWGKALCEALFDVTEKFYCPFADCSALLINDRMEAVKNSECPNCNRMFCAQCRVPWHDGIKCSEFEKLNADERGREDVMFMNLAKDMQWRRCPRCRIFVAKSMGCNVMSCRCRCVFCYACGGEYSFGRCNCYKMSLSNIYSNQRQEQIQSRVFRGGVFPGSTTRNHSNRRFYRWNKHSRE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02710 337 CDD Rcat_RBR_unk 245 281 - -
Trre3g02710 337 Pfam IBR domain, a half RING-finger domain 173 219 IPR002867 GO:0008270
Trre3g02710 337 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g02710 337 CDD BRcat_RBR_unk 170 222 - -
Trre3g02710 337 SMART ibrneu5 157 219 IPR002867 GO:0008270
Trre3g02710 337 SMART ibrneu5 229 288 IPR002867 GO:0008270
Trre3g02710 337 FunFam RBR-type E3 ubiquitin transferase 84 170 - -
Trre3g02710 337 SUPERFAMILY RING/U-box 230 289 - -
Trre3g02710 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 170 IPR013083 -
Trre3g02710 337 ProSiteProfiles Zinc finger RING-type profile. 89 135 IPR001841 -
Trre3g02710 337 SUPERFAMILY RING/U-box 163 224 - -
Trre3g02710 337 ProSiteProfiles TRIAD supradomain profile. 85 303 IPR044066 -
Trre3g02710 337 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 311 IPR031127 GO:0004842|GO:0016567
Trre3g02710 337 Gene3D - 216 337 - -
Trre3g02710 337 Pfam Zinc finger, C3HC4 type (RING finger) 89 134 IPR018957 GO:0046872
Trre3g02710 337 SUPERFAMILY RING/U-box 84 168 - -
Trre3g02710 337 ProSitePatterns Zinc finger RING-type signature. 107 116 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02710 Trre-Chr3 28750381 28752440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02710 89 279 C3H Transcription Factor Family AT2G19610 29.851 4.48e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02710 K11975 - gmx:100803898 328.176