Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02709 ATGGATTTGGAGACATTCCACATGATAACAAGAAGTAATAGAGTTCCACAATTTATTCCGGAGATAATCGACCTCGACACCTACCGCTTATCCGGCAAGCGAGTCATCTCCGAGGTCATTGATCTTTCGGATGACGAAGACGACGATGACATTAAGATCCTTAATTTCATTCCCAAAAGTACTTCATTCGGAAAACGCAAAAGAATCGAAAAAGGAGAGTCTTCAAATTCAAGAAACGCGCCATTTGTTTGTGAAATCTGCACGGACACTAAAACAATGAGGGACGCTTTTTACATCAGCGGTTGCTCTCACGTTTATTGCTCCGATTGCGTGGCAATGTACATCGGTGCTAAACTTGATGATAACATCACAAACATTGGGTGTCCGGTTCCCGGGTGCAGTGGTTTATTACAACCGGAGCTTTGCCATTCAATTCTTAAGCCTGAGGTTTTTGAACGATGGGGTAAGGCGTTGTGTGAGGCTTTGATTGATGTATCGGAGAAGTTTTATTGTCCTTTTGCTGACTGTTCCGCTCTTTTGATCAATGACGGAACGGAGGCTGTTGGGAATACTAAATGTCCTCATTGTAATAGGATGTTTTGTGCACAATGCAAGGTTCCATGGCATGACGGAATCGAATGCAGCGAGTTCGAGAAACTACACGCGGACGAGAGGGGGAGAGAAGATGTTATGTTGGTTAACCTTGCGAAGGAAAAGAATTGGCAGCGATGCCCCAAATGCAAATTTTATGTTGGCAGAGATACAGGCTGCAATATCATGTCCTGCAGGTGCGGTTGTTGCTTTTGTTACCAATGTGGATCAAGTTATTCTTTTCCCGATGTGTGTGACTGTTATAAGCTGAAGACAAGAGGAATTCCCTCCACTGTTTCCATCGGTGGAAATTTTCCTTTCCCTCATGAGTACCCTACAAATATAGCTCAGATATATCAACAAAATTTCCCTGGTAGAGTTTCCACCAGTGGAAATTTTCCTAACATAAACCCTCCCTATTCGTATAAACCACAACAACAGAATTTCTTTGGAATCTCCGAAGGAGTTTCCACAAGTGGAGTTTTCTCCGGTGGAAATTTTTCTATCTGGAACCCTCCCTACTCGTATGAACCACAACAACAAAATTTCTTTGGAATCTCCGAAGGAGTTTCCACCGGTGAAGTTTTCACCAGTGGAAATTTTCCTAACGGGAACCCTCCCTACTCGTATAAACCACAACAACAATTTTTCACTGGAATTTCCGGGGGAGTTTACACTAGTGGAACTTTCCCTTATGATTACCCCATCAATTCGGCTCAACCACGAGAACACATTCCCAACGGAGTTGCCTATACGGTTCAACAACAGGAAGAAATTTCCTCCATAGGTTCAACAACAGGAACTTGGTCTACTTTCCCATTGGAGGAAGAGGAAATTTCCCTCCTGCAACTTGGTCTAATTTCGGCTGAACGACATGAAAATATTTACAAGGGAGTTGTCAATCCGACAAAGCAAGAGGAATAG 1515 0.431 MDLETFHMITRSNRVPQFIPEIIDLDTYRLSGKRVISEVIDLSDDEDDDDIKILNFIPKSTSFGKRKRIEKGESSNSRNAPFVCEICTDTKTMRDAFYISGCSHVYCSDCVAMYIGAKLDDNITNIGCPVPGCSGLLQPELCHSILKPEVFERWGKALCEALIDVSEKFYCPFADCSALLINDGTEAVGNTKCPHCNRMFCAQCKVPWHDGIECSEFEKLHADERGREDVMLVNLAKEKNWQRCPKCKFYVGRDTGCNIMSCRCGCCFCYQCGSSYSFPDVCDCYKLKTRGIPSTVSIGGNFPFPHEYPTNIAQIYQQNFPGRVSTSGNFPNINPPYSYKPQQQNFFGISEGVSTSGVFSGGNFSIWNPPYSYEPQQQNFFGISEGVSTGEVFTSGNFPNGNPPYSYKPQQQFFTGISGGVYTSGTFPYDYPINSAQPREHIPNGVAYTVQQQEEISSIGSTTGTWSTFPLEEEEISLLQLGLISAERHENIYKGVVNPTKQEE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02709 504 Pfam IBR domain, a half RING-finger domain 158 214 IPR002867 GO:0008270
Trre3g02709 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 166 IPR013083 -
Trre3g02709 504 SUPERFAMILY RING/U-box 80 164 - -
Trre3g02709 504 ProSiteProfiles Zinc finger RING-type profile. 84 130 IPR001841 -
Trre3g02709 504 Gene3D - 212 291 - -
Trre3g02709 504 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Trre3g02709 504 SMART ibrneu5 152 214 IPR002867 GO:0008270
Trre3g02709 504 FunFam RBR-type E3 ubiquitin transferase 79 165 - -
Trre3g02709 504 CDD Rcat_RBR_unk 240 276 - -
Trre3g02709 504 ProSiteProfiles TRIAD supradomain profile. 80 291 IPR044066 -
Trre3g02709 504 SUPERFAMILY RING/U-box 225 285 - -
Trre3g02709 504 CDD BRcat_RBR_unk 165 217 - -
Trre3g02709 504 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 285 IPR031127 GO:0004842|GO:0016567
Trre3g02709 504 SUPERFAMILY RING/U-box 158 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02709 Trre-Chr3 28668379 28671300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02709 84 274 C3H Transcription Factor Family AT2G19610 28.856 3.34e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02709 K11975 - gmx:100803898 315.464