Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02708 ATGGGAAACAACCTTTGCATTCTTCATTGTATCCCTATAAAAACAAAGAAAAGAAAGAATAAGAAACAAAACCTCTCATCTCCATCATTTTCTAATCCCTCCCCTAATTTAACACTAGACAAATTTTTTGAAACCAATGAAATTACTATTCCCACCCCACTTCCTATTAAAGGTGTCCCATTTTATGATTGTGAAATTTGCTATGAATCAAAGCCTCTAAATGACTCATTCAATATAGAAGGTTGCACTCATTTCTTTTGCACAAAATGCACAATCAAATACATAGTTTCAAAGCTTCAAGAAAACAAGGTTATCCTAAATTGTCCTGAATCAGGTTGTTCTGGAGTATTGAATCCTCAATATTGCAAACCTATTTTGCCTAACAATGTGTTAAATTGGTGGGAAAAAGCTTTGTCTGAATCAGTGGTTCCTGAAAAGAATAAATTTTATTGTCCTTTTTATAATTGTTCAGCACTTTTATTTAGTGATGATAATCACTATGGAAAAGTGATTGAAGAATGTACATGTCCTCATTGCAAGAGAAGTTTTTGTGTTAAGTGTAAAACTCCATGGCATAAAGAAATGAGTTGTGAAAAGTTTCAAAGATTGAAGCATAGTAATGATGCTTTGATGTTGGATCTTGCTGATAGAAAGAAATGGAAAGAGTGTCCAAATTGTAGACATTTGATTGAAAAGTCTCAAGGTTGCAATCACATGAAATGCAGGTGTTCGTACATGTTTTGTTACCAATGTGGACGAGGCATTAATCCTCCTCACAAAAGTTGTGATCATTAA 795 0.3321 MGNNLCILHCIPIKTKKRKNKKQNLSSPSFSNPSPNLTLDKFFETNEITIPTPLPIKGVPFYDCEICYESKPLNDSFNIEGCTHFFCTKCTIKYIVSKLQENKVILNCPESGCSGVLNPQYCKPILPNNVLNWWEKALSESVVPEKNKFYCPFYNCSALLFSDDNHYGKVIEECTCPHCKRSFCVKCKTPWHKEMSCEKFQRLKHSNDALMLDLADRKKWKECPNCRHLIEKSQGCNHMKCRCSYMFCYQCGRGINPPHKSCDH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02708 264 ProSiteProfiles Zinc finger RING-type profile. 64 109 IPR001841 -
Trre3g02708 264 SMART ibrneu5 132 197 IPR002867 GO:0008270
Trre3g02708 264 SMART ibrneu5 203 262 IPR002867 GO:0008270
Trre3g02708 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 146 IPR013083 -
Trre3g02708 264 Gene3D - 195 264 - -
Trre3g02708 264 FunFam RBR-type E3 ubiquitin transferase 60 146 - -
Trre3g02708 264 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 257 IPR031127 GO:0004842|GO:0016567
Trre3g02708 264 SUPERFAMILY RING/U-box 138 203 - -
Trre3g02708 264 SUPERFAMILY RING/U-box 205 264 - -
Trre3g02708 264 CDD Rcat_RBR_unk 219 252 - -
Trre3g02708 264 Pfam IBR domain, a half RING-finger domain 214 262 IPR002867 GO:0008270
Trre3g02708 264 Pfam IBR domain, a half RING-finger domain 138 197 IPR002867 GO:0008270
Trre3g02708 264 SUPERFAMILY RING/U-box 61 144 - -
Trre3g02708 264 ProSiteProfiles TRIAD supradomain profile. 60 264 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02708 Trre-Chr3 28659318 28666083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02708 61 252 C3H Transcription Factor Family AT2G19610 31.373 1.45e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02708 K11975 - rcu:8259039 256.529