Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02699 ATGATTTTGGATGAAAAGAACAATAGTATTGATCATAGTGATGACGAATCAGTTGAGATTTTGGACGAAGAATGGCTTAATCGGAAGAAGACTAAACAGAAGTCGCCATTAGTTTCTCCTCGACCACATAAGAAAGTTAGAGGTGAGATTAAGAAGACTAGTGAAAGAACAGCTTCATCAATGAATTGGCCAAAGGGAGCTAAAGCTCAGGAACCTATTCATCTGGCAGGAAATCGGCTGCATGTACCAAGTTTAAAAGGTGTTATTGAGAACATAGACAAGTATGTGATGCTGAAGATTGGGAAAAGATCATGGAATGTGAAACTGATTCGTTGTTATGACGATAAAAATGGCCGTCGCTGCCTTTCAGCCAGTTGGTCATTGTTTGCAAGTGAAAGTGGACTGCAACCAGGAGATGTTTGTGTATTTGAACTGATAAACAAGAATGATTTAGTTTTTAAAGTTCATGTTTTCTTAAAGGGACAAAATTAA 492 0.376 MILDEKNNSIDHSDDESVEILDEEWLNRKKTKQKSPLVSPRPHKKVRGEIKKTSERTASSMNWPKGAKAQEPIHLAGNRLHVPSLKGVIENIDKYVMLKIGKRSWNVKLIRCYDDKNGRRCLSASWSLFASESGLQPGDVCVFELINKNDLVFKVHVFLKGQN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02699 163 CDD B3_DNA 103 158 IPR003340 GO:0003677
Trre3g02699 163 SUPERFAMILY DNA-binding pseudobarrel domain 91 158 IPR015300 -
Trre3g02699 163 ProSiteProfiles B3 DNA-binding domain profile. 103 161 IPR003340 GO:0003677
Trre3g02699 163 Pfam B3 DNA binding domain 96 158 IPR003340 GO:0003677
Trre3g02699 163 Gene3D - 67 160 IPR015300 -
Trre3g02699 163 SMART B3_2 79 161 IPR003340 GO:0003677
Trre3g02699 163 MobiDBLite consensus disorder prediction 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02699 Trre-Chr3 28586945 28587885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02699 80 158 REM Transcription Factor Family AT1G49480 32.099 2.18e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g02699 B3 3.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02699 - - tpra:123887513 164.851