Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02692 ATGGAATACGGTGGAGGCTCGAAACTAACCGGTATTAGACAGATTGTGAGACTAAAAGAATTACTTCAAAAATGGCAAAATGTCACATTAGGCCCGAAACCTCCGATTCCAAGACTTGAAGAAGCTGATGATGGTATGAGATCACCAATAATCAACAAAAGGATAACGAATCTCCAAAGTTGTGACTCTGATGAAGAAACCTGTCGAACTCCTGATCCTGAACCACCCCATGATGTCCCAAAAGGTTACTTGGCTGTCTATGTTGGACCCGAGCTTCGACGGTTCATTATTCCAACTAGCTACCTTAGCCATTCGTTATTCAAAATGTTGCTCGAAAAGGCTGCTGAGGAATTCGGGTTTGATCAGAGTGGCGGGCTCACAATACCGTGTGAGATTGAGACCTTTAAATACCTCATCAAATGCATCGAGACCCAAGAGAAAGAACAACATGATGATGCCTCATTTGGAAACTCAGAACCAGAACAAGAAGAAACCTTGGAAGAGTAA 507 0.428 MEYGGGSKLTGIRQIVRLKELLQKWQNVTLGPKPPIPRLEEADDGMRSPIINKRITNLQSCDSDEETCRTPDPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKMLLEKAAEEFGFDQSGGLTIPCEIETFKYLIKCIETQEKEQHDDASFGNSEPEQEETLEE 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02692 168 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 62 138 IPR003676 GO:0009733
Trre3g02692 168 Pfam Auxin responsive protein 60 142 IPR003676 GO:0009733
Trre3g02692 168 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02692 Trre-Chr3 28528131 28528864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02692 1 162 Calmodulin-binding Proteins AT5G20810 66.463 2.73e-74 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02692 K14488 - cpap:110808074 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02692 3 28528131 28528864 Trre3g02692 3 28528131 28528864 ECH
Trre15g05093 15 60675270 60676554 Trre3g02692 3 28528131 28528864 PCT