Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02682 ATGATGAAGACAGGTCCGTGTATGCATTGCGGAATTAATTCAACTCCACTTTGGCGTAATGGACCAAATGAAAAGCCTGTCTTATGCAATGCTTGCGGGTCTCATTTTAAGGCTAGAGGAACCCTTGAAAACTATCTCCCAAGGATAGTCCAACAAGCTCAATTGTTAGAGCTTAACAATCAAGAAACATGTGAACACAATGTTCAACTTAACATTGATGAAGCTGTATCTGAAAAAGGTTTCGAGTTTTCAAGTTCATCTTCTTCAGGTAATACAAATAGTAATTAG 288 0.3785 MMKTGPCMHCGINSTPLWRNGPNEKPVLCNACGSHFKARGTLENYLPRIVQQAQLLELNNQETCEHNVQLNIDEAVSEKGFEFSSSSSSGNTNSN 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02682 95 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 44 - -
Trre3g02682 95 CDD ZnF_GATA 6 41 IPR000679 GO:0006355|GO:0043565
Trre3g02682 95 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Trre3g02682 95 PANTHER OSJNBB0038F03.10 PROTEIN 7 93 IPR044589 -
Trre3g02682 95 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Trre3g02682 95 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Trre3g02682 95 Gene3D - 2 68 IPR013088 GO:0006355|GO:0008270
Trre3g02682 95 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02682 Trre-Chr3 28368912 28369993 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02682 1 47 C2C2-Gata Transcription Factor Family AT4G17570 70.213 6.92e-21 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre3g02682 GATA 1.3e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02682 - - psat:127115742 97.4413