Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02669 ATGGAACAACTCAATCCCACGCTTCTTCAATTCTTTCTCCTTCTCTTACCTCTCTTTGCTGTTCCTGGTTTCACTTCCACTGCGACACTTAATGAGACTTGTGGTCACTTTGATGGTTCATTCAATAGAAACACTAAAGCGCCATGCCCGAATGGTTGGGTTATGGACCCTAACAAGACCAAGTGTTTTCTCCATGTTGGGAGGCCCCAATCTTGGAATGACTCAGAGACATGCTGTAACAAATATGGTGGACATTTAGCATCATTGACTTCGGTTCAGGAGCTACATTTTGCTCAAAGTCTATGTGGTGAATCCATAAATAGTTGCTGGATTGGTGGAAGAAGACTCAACAACACTATATCGGGTTTTCAGTGGACGTGGTCTGATAATTCTCAATGGAATAAGTCCATGTTTCCTTTGGCTAATGTTCCACTTAATTGTACTGGAACTGGACGATCCTGTCTTAGGAACATTACAGAGAATGTATGTTCCGTAATGACTAATAATTCAAAATCTCTCATCAGTGAGAGATGTGATAATCCTCATGCTTCTCTATGTATACTTGACATAGATACGAAATGTAACCATATGCACTGCCACAGGGACTACCTAATCATCCTTGCGGTGGTGAGTGGATTAATACTCTCGACAACATTTGCAGTGGTTGTCTGGCTTCTTGTATATAAGCGGGGTAAGAAGAGAAGACGATCTAGAAAACTAACTGATCCCGCCACTTCACTTCCATCATGGAAAATCTTTACCAAAGAGGAACTAAGGTCAATTACGAAAAACTTCAGTGAAGGAAACCGTCTTGTTGGGGATGCCAAGACTGGTGGTAGCTATAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCTGTAAAGAGATTAAAGAGGTCAAGCTTTAAGAGGAAAAAGGAGTTCTATTCCGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTGGTTGTGATGGGCTGCTGTTATGATCATGGTGACCGTTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGACAAATGGCTACATCACATTCCAAGGGGAGGTCGCAGCTTAGACTGGGCCATGAGAATGAAAATTGCAACGACACTTGCTCAAGGAATCGCGTTTCTGCATGACAAGGTTAAGCCACAAGTTGTTCATCGAGATATACGAGCTAGTAATGTGCTGCTTGACGAAGAATTTGGAGCACACCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCATATGAAGCAATGCATGAGAGGACTGTGATGGCTGGTGGAACTTATGGATACCTTGCTCCGGAGTTCGTGTACAGAAACGAGCTTACAACAAAGAGTGATGTTTATAGTTTTGGTGTCTTACTACTTGAAATAGTTAGTGGACGTAGACCGGCACAAGCAGTTGATTCTGTGGGTTGGCAAAGTATATTCGAGTGGGCTACACCTCTTGTTCAAGCTCATCGCTACCCTGAACTGTTGGATCCTTATATATCTTCCTCGTCTACTAGTATCATCCCTGAGACTAGTTCTATCCAGAAGGTGGTTGACCTCGTTTATTCATGCACGCAGCATGTTCCTTCTATGCGCCCTAGAATGTCGCACGTTGTTCATCAGTTGCAACAGTTTGCCCAGCCACCTGTAAAATAA 1659 0.434 MEQLNPTLLQFFLLLLPLFAVPGFTSTATLNETCGHFDGSFNRNTKAPCPNGWVMDPNKTKCFLHVGRPQSWNDSETCCNKYGGHLASLTSVQELHFAQSLCGESINSCWIGGRRLNNTISGFQWTWSDNSQWNKSMFPLANVPLNCTGTGRSCLRNITENVCSVMTNNSKSLISERCDNPHASLCILDIDTKCNHMHCHRDYLIILAVVSGLILSTTFAVVVWLLVYKRGKKRRRSRKLTDPATSLPSWKIFTKEELRSITKNFSEGNRLVGDAKTGGSYSGVQPDGSKVAVKRLKRSSFKRKKEFYSEIGRVARLRHPNLVVVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPYISSSSTSIIPETSSIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPVK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02669 552 CDD CLECT 61 186 - -
Trre3g02669 552 ProSitePatterns Tyrosine protein kinases specific active-site signature. 388 400 IPR008266 GO:0004672|GO:0006468
Trre3g02669 552 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 342 552 - -
Trre3g02669 552 Pfam Lectin C-type domain 69 186 IPR001304 -
Trre3g02669 552 Pfam Protein tyrosine and serine/threonine kinase 286 543 IPR001245 GO:0004672|GO:0006468
Trre3g02669 552 SMART CLECT_2 49 187 IPR001304 -
Trre3g02669 552 Gene3D Phosphorylase Kinase; domain 1 241 341 - -
Trre3g02669 552 SUPERFAMILY C-type lectin-like 44 187 IPR016187 -
Trre3g02669 552 Gene3D Transferase(Phosphotransferase) domain 1 342 548 - -
Trre3g02669 552 Gene3D - 37 189 IPR016186 -
Trre3g02669 552 SMART tyrkin_6 265 543 IPR020635 GO:0004713|GO:0006468
Trre3g02669 552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 79 545 - -
Trre3g02669 552 ProSiteProfiles C-type lectin domain profile. 58 187 IPR001304 -
Trre3g02669 552 ProSiteProfiles Protein kinase domain profile. 266 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02669 552 SUPERFAMILY Protein kinase-like (PK-like) 239 543 IPR011009 -
Trre3g02669 552 FunFam C-type lectin receptor-like tyrosine-protein kinase 243 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02669 Trre-Chr3 27921977 27927982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02669 79 549 Receptor kinase-like Gene Family AT1G52310 71.399 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Trre3g02669 PK_Tyr_Ser-Thr 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02669 - - gmx:100779497 926.006