Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02667 ATGCCTCGGAGAAATGCTAACTTACCAATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAACACTTAAAATACCAAATAAGTTTACAAGGAGACATGGAGTTGGTTTATCAAATCCAGTGTTGATGAAGCCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAACTTTTACTCAAAATTACTCTCTAGGACATGGTTGTTTGGTGGTGTTTCAATATGAACAAGGGACTTCAAAATTCAATGTACTCATACTTGGCCAGAATGCAGTAGAAATAGACTATGATGATGAATCTGTTCAGATTTTGGATGAAAAGAACAATAGTATTATTGATCATAGCGATGACGAATCAGTTGAGGTTTTGGACGAATGGCTTAATCGAAAGAAGACTAGACAGAGGTCGCCATTAGTTTCTCCTCGGCCACATAAGAAAGTTAGAGGTGAGATTAAGAAGACTAGTGAAAGAACAGCTTCATCAATGAATTGGCCAAAGGAAGCTAAAGCTCAGGAAGTAGCTAAAAATTTCAAATCAAGCAATCCTTTTTTCACAATTCTCATAAAGCCTATTCATCTCACAGGAAATCGGCTGCATGTACCAAGTTTAAAAGGTGTTATTGAGAACATAGACAAGTATGTGATGCTGAAGATTGGAAAAAGATCATGGAATGTGAAACTGCTTCTTTGTTATGACGATAAAAATGGCCGTCGCTGCCTTTCAGCCGGTTGGTCATTGTTTGCAAGTGAAAGTGGACTGCAACCAGGAGATGTTTGTGTATTTGAACTGATAAACAAGAATGATTTAGTTTTTAAAGTTCATGTTTTCTTAAAGGGACAAAATTAA 885 0.365 MPRRNANLPIRFFKIILQTNLQTLKIPNKFTRRHGVGLSNPVLMKPPDGTKWKVYWKKINGEIWFEKGWKTFTQNYSLGHGCLVVFQYEQGTSKFNVLILGQNAVEIDYDDESVQILDEKNNSIIDHSDDESVEVLDEWLNRKKTRQRSPLVSPRPHKKVRGEIKKTSERTASSMNWPKEAKAQEVAKNFKSSNPFFTILIKPIHLTGNRLHVPSLKGVIENIDKYVMLKIGKRSWNVKLLLCYDDKNGRRCLSAGWSLFASESGLQPGDVCVFELINKNDLVFKVHVFLKGQN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02667 294 CDD B3_DNA 11 100 IPR003340 GO:0003677
Trre3g02667 294 PANTHER B3 DOMAIN-CONTAINING 11 287 - -
Trre3g02667 294 ProSiteProfiles B3 DNA-binding domain profile. 9 103 IPR003340 GO:0003677
Trre3g02667 294 SUPERFAMILY DNA-binding pseudobarrel domain 190 289 IPR015300 -
Trre3g02667 294 SUPERFAMILY DNA-binding pseudobarrel domain 11 110 IPR015300 -
Trre3g02667 294 CDD B3_DNA 196 289 IPR003340 GO:0003677
Trre3g02667 294 MobiDBLite consensus disorder prediction 147 176 - -
Trre3g02667 294 Pfam B3 DNA binding domain 196 289 IPR003340 GO:0003677
Trre3g02667 294 Pfam B3 DNA binding domain 20 99 IPR003340 GO:0003677
Trre3g02667 294 Gene3D - 174 291 IPR015300 -
Trre3g02667 294 SMART B3_2 196 292 IPR003340 GO:0003677
Trre3g02667 294 SMART B3_2 12 103 IPR003340 GO:0003677
Trre3g02667 294 ProSiteProfiles B3 DNA-binding domain profile. 196 292 IPR003340 GO:0003677
Trre3g02667 294 Gene3D - 7 104 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02667 Trre-Chr3 27919322 27920861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02667 8 289 B3 DNA Binding Superfamily AT3G18990 27.988 7.07e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g02667 B3 1.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02667 - - tpra:123887513 390.578