Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02660 ATGAAGGCTCCTTCTAATGGTTACTTGCCTAATTCTGGTGAAGGTGAAAGGAAAGCCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCGTTGGTTTCTATACCTCCCGTTGGAAGTCTTGTTGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCAGATTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGCTACATGCTGACCCTGAAACTGACGAGGTATACGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTTGCTTCAGACATGGGACTAAAACAAAACCAGCAACCAACTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGATTTTCAGTGCCTCGTAGAGCTGCCGAGAAAATATTCCCACCTCTGGATTTTTCAATGCAACCACCGGCTCAAGAAATAGTTGCCAAAGATTTGCATGACACTACGTGGACGTTTAGACATATTTATCGCGGACAACCGAAGAGGCATCTATTAACTACTGGTTGGAGTGTCTTTGTTAGCACGAAAAGGCTCTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCGCTATCTTCATCGGTAATATCAAGTGACAGCATGCATATTGGCATTCTTGCCGCTGCGGCTCACGCTGCTTCAAATAATAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCCTGTGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCACTGTACACTCATGTTTCCCTCGGAATGAGATTCAGAATGATGTTTGAGACCGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACCGGGATTAGTGACTTGGATTCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCTACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCTGTTGTGACTCCTTTCTACATTTGCCCGCCTCCGTTTTTTAGGCCAAAATTCCCCAAGCAACCAGGAATGCCAGAAGACGAGTCTGAAATAGAAAATGCTTTCAAGAGAGCTATGCCATGGCTTGGAGATGAACTCGGCATGAAAGATGCCTCAAGTTCAATCTTCCCCGGTTTGAGTTTAGTCCAATGGATGAGCATGCAGCAGAATAATAATAATAATAACAATAATAATCAGTTTTCTGCTCCTCAATCAGGACTTATACCTCCATCCATGCTTTCATCAAACGCAATGCATGCTAACCTTAACACCGATGATCCATCCAAGATATTGAACTTTCAATCCCCTGCTGGACTTTCTGCTCCAAATCATCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCAATTGCAACAGTCTCCGAATGTGTGGTCTCAACAGCAACAACAGCAGCAGAAGATGCAGTCGATGTTGCAAACACCGTTAAACCAGTTGCAGCAACAACAACAACAGCAGCAGCAGAGGCAACATCAACTGGCTGGACCACAAAACCTGCCGCAGATGCAGCAACAACAGCCCCAACTGACTCAACCCAATGCACATCAGCCTCAACCACAGCAGCAACAACAGCAAATCCAACAGCCGAGTCAAAACACGACTATGAATAATGGGACAGTTAGTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCTGTAACATACTCTCAGCTTCAGCAACAGTTGCTCTCGGGAAATGTCCAAGCCCAACAAAATTTCCAGTCAGTCGGCAAGAATGGATTGATTATGACATCCTTACCACAAGACTCGCAATTTCAGCAACAGATAGACCAACAACAACAAGCTAGTCTCGCACAGCGGCAGCAACAGCAACAACAACAACAACAACAACAGACTCAGTTGCAACAATCATCATTACAGTTATTGCAACAAAGCATGTTACAAAGGGCACCACAGCAATCACAAATGACTCAAATTTCGCCGCAAAACACCTCAGACCAACAACAGATGCAGTTGCTGCAGAAGTTGCAGCAGCAACAACAGCAGCAACCACTTTCCACGTCTTCCCCACTTTTGCAGTCTCAGCATCTGCAGCAACAAAACCAGCAATTGCCGCAGCAGCCTATGTCACAGCATCATCAGCCTCAACAGCTTGGTAACAACACATTCTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCAGCTCTCATGCATCCGCAACAGCTTCCTGTGAACAATCAACAGAATACACAAAAATCACCGACAAATACTAGAGCTCCCTCGGCTTTTACAGATGGAGATGCCCCGTCATGCTCAACTTCGCCATCTACTAATAACTGTCAGACATCGCCTCCAAACCTCCTGAAAAGAAATCAAACAGATGCATTTGGAGGACCTTTGATCGTTGAAACCACCAATAATATGATACAGGAGCTTCAAAGTAAGTCTGACATGCAGAGCAAACACGAATTGCAAGGTGTAAAAGGACCCGAAAAGCAAAAGTACAAAGGGGCGATCAATGATCAGATGGAAGCTTCTTCCGGAACATCTTACGGTATTGATCCTGGTAATAACATCCACCAGAACTTTCCACTTTCCAACTTCTACATGGATAGTGATGTCCACTCGCAGCAACCAAGAAGTAACTTACCATTTGCCTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGTGGTGCTCCGAGAGATATTGAAACTGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGGGTGCCGAACATGTCTTTCAAGCCAGGATGCTCAAGTGATATTGCTATACCTGATACTGGCGTTATGAATAATGGCTTGTGGTCTAATCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGATATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGACTGGAAACTAGTATATGTGGATCACGAAAATGACATTCTTCTCGTCGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCTGAGGTACAACAGATGAGCTTGGAAGGGGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGTTCAGAAAGCGGTAATGCATGGAGGGCACAATACGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3396 0.4373 MKAPSNGYLPNSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDSVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNNNNNQFSAPQSGLIPPSMLSSNAMHANLNTDDPSKILNFQSPAGLSAPNHQFNKPNLPNQVNQLQQSPNVWSQQQQQQQKMQSMLQTPLNQLQQQQQQQQQRQHQLAGPQNLPQMQQQQPQLTQPNAHQPQPQQQQQQIQQPSQNTTMNNGTVSSNQIPNQCVQQPVTYSQLQQQLLSGNVQAQQNFQSVGKNGLIMTSLPQDSQFQQQIDQQQQASLAQRQQQQQQQQQQQTQLQQSSLQLLQQSMLQRAPQQSQMTQISPQNTSDQQQMQLLQKLQQQQQQQPLSTSSPLLQSQHLQQQNQQLPQQPMSQHHQPQQLGNNTFSMEKLLNNNYSSSALMHPQQLPVNNQQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNLLKRNQTDAFGGPLIVETTNNMIQELQSKSDMQSKHELQGVKGPEKQKYKGAINDQMEASSGTSYGIDPGNNIHQNFPLSNFYMDSDVHSQQPRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSSDIAIPDTGVMNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02660 1131 FunFam Auxin response factor 124 228 - -
Trre3g02660 1131 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre3g02660 1131 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1093 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre3g02660 1131 MobiDBLite consensus disorder prediction 777 825 - -
Trre3g02660 1131 Gene3D - 123 227 IPR015300 -
Trre3g02660 1131 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Trre3g02660 1131 Gene3D - 289 360 - -
Trre3g02660 1131 MobiDBLite consensus disorder prediction 777 822 - -
Trre3g02660 1131 Gene3D - 999 1093 - -
Trre3g02660 1131 ProSiteProfiles PB1 domain profile. 1004 1088 IPR000270 GO:0005515
Trre3g02660 1131 SUPERFAMILY CAD & PB1 domains 1017 1082 - -
Trre3g02660 1131 CDD B3_DNA 125 217 IPR003340 GO:0003677
Trre3g02660 1131 MobiDBLite consensus disorder prediction 675 748 - -
Trre3g02660 1131 SMART B3_2 126 228 IPR003340 GO:0003677
Trre3g02660 1131 FunFam Auxin response factor 999 1093 - -
Trre3g02660 1131 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Trre3g02660 1131 Pfam AUX/IAA family 1001 1090 IPR033389 -
Trre3g02660 1131 FunFam Auxin response factor 289 361 - -
Trre3g02660 1131 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre3g02660 1131 MobiDBLite consensus disorder prediction 424 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02660 Trre-Chr3 27702320 27708218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02660 1 496 B3 DNA Binding Superfamily AT1G19220 80.762 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre3g02660 AUX_IAA 4.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02660 K14486 - gmx:100804628 1606.27