Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02659 ATGGCTTCTTCTCAGTTAACAGCATCATCAATTTCTACGAGAAACGTTGTTGCATCCTTTGAAGGACTTCGACCTGTTCAATTTCATTGTCCCAGACATGTTACAATTGGTAATCCTGCACGTAGGTCGTTTAAGGGTCTTGTTGTCAAAGCTGCTACTGCTGTTGCTCCAAAGTACACCGCAATCAAGCCTCTGGGCGACCGGGTACTTCTAAAAATTAAGGAAGCAGAAGAGAAGACACAAGGTGGGATTTTGCTTCCATCAAATGCTCAAACAAAGCCTCAAGGGGGTGAAGTGGTTGCTGTCGGAGAAGGAAAAACACTTGGGAAGAACCAAGTTGAAATTAGCGTGAAGCCGGGTGCACAAGTCGTGTATTCAAAGTATGCAGGTACTGAGGTTGATTTCAACGGTGAAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGATGACATCAAGGATCTTAAACCCTTGAACGATAGAGTTTTGATACAGATTGAAAAAGCTGAAGAAAAAACTTCCGGCGGTTTGTTTCTTACACAAGCATCCAAGGAGAAACCTTCCTTTGGAACAGTGGTAGCAGTTGGCCCCGGCCTTGTGGATGAGGAAGGCAATAGAAAACCTCTGCCTGTTTCTTCCGGGAACACGGTTTTGTACTCAAAATACGCTGGTAATGACTTCAAAGGCAAAGATGGCTACGAGTACATTACCTTGAGGAGTTCAGATGTCATCGCTATACTATCCTAG 762 0.437 MASSQLTASSISTRNVVASFEGLRPVQFHCPRHVTIGNPARRSFKGLVVKAATAVAPKYTAIKPLGDRVLLKIKEAEEKTQGGILLPSNAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIQIEKAEEKTSGGLFLTQASKEKPSFGTVVAVGPGLVDEEGNRKPLPVSSGNTVLYSKYAGNDFKGKDGYEYITLRSSDVIAILS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02659 253 Gene3D GroES chaperonin 55 154 IPR037124 GO:0006457
Trre3g02659 253 Gene3D GroES chaperonin 155 253 IPR037124 GO:0006457
Trre3g02659 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 CDD cpn10 62 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 158 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Trre3g02659 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Trre3g02659 253 FunFam 20 kDa chaperonin, chloroplastic 55 154 - -
Trre3g02659 253 FunFam 10 kDa chaperonin 158 253 - -
Trre3g02659 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre3g02659 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Trre3g02659 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
Trre3g02659 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Trre3g02659 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02659 Trre-Chr3 27679709 27682274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02659 1 253 Calmodulin-binding Proteins AT5G20720 69.650 1.08e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02659 K04078 - gmx:100814751 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02659 3 27679709 27682274 Trre3g02659 3 27679709 27682274 ECH
Trre15g05106 15 60791553 60793547 Trre3g02659 3 27679709 27682274 PCT