Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02649 ATGTGGCCGTGGAATAGAACTCCGTGTCCAGCGTGCAAGAATCAGCGAAGAAAATGCAAAAAAGAATGCATTTTTGCACCATATTTTCCGTCAGATAATCCTAAAAAATTTGCTTATGTACAAAAGGTTTTTGGTGTTAGTAACGTTTCAAAACTACTCAATGAGATGAATATTGCACAACGTGCAGATGCCGTTAAATCATTGACGTATGAAGCAGAAGCACGTGTGAGGGATCCGGTTTATGGTTGTGTTGGCCTTATTTCACAGCTTCAGGATCAAGTTCGAAACTTGGAAAATGAACTTGTTATGGTGAAGAAACAACTCGCTTCTTTTCATGCTATAGTTCCTCTACCTTTGGCTACAACGACCAAAAGTTCTTTTTCCTCCACTTCTTCTGCTCAACATTTTTTCTCGAAGATGGTGAAGGAAGAAAAAGATAATTTTGATTAG 450 0.3844 MWPWNRTPCPACKNQRRKCKKECIFAPYFPSDNPKKFAYVQKVFGVSNVSKLLNEMNIAQRADAVKSLTYEAEARVRDPVYGCVGLISQLQDQVRNLENELVMVKKQLASFHAIVPLPLATTTKSSFSSTSSAQHFFSKMVKEEKDNFD 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02649 149 Coils Coil 87 107 - -
Trre3g02649 149 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Trre3g02649 149 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 135 - -
Trre3g02649 149 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02649 Trre-Chr3 27345870 27346319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02649 7 117 AS2 family AT5G66870 60.526 1.55e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre3g02649 LOB 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02649 - - mtr:25489402 172.555