Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02646 ATGGTGAAATCAAACGTGGAAAAAACTGCGGCTGAGAGAAGTAATTCTTCATTATACAGAGGAGTAAGCAAGAGGAAGTGGGGAAAATATGTTTCTGAAATTAGATTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCATTCGACACCGCCGAAAAAGCGGCGCGTGCATTTGACGCGGCTACTTTCTGCTTACGTGGCAGTGGTGGTAAGTTTAATTTCCCTAATAACCCGCCGGATATTCCCGGGGCAAGATCCATGACCCATTCTGAAATTCAAGCTGCTGCAACCCGTTTTGCAAATTCGGAGCCCCGTGAGGAGAACTCGGGTCGGCCTGATAATAAATTTGTCGAAACACCGTCTTCGTCGGAGGTGACGGCATTGTTGCCTATGGAGTTGTCGTCTCCTGCTCTCTCCGATACGACGGTTCAGACGGAGAGTGATGTTATAGATAATGGGTTGTTTAGTGACCTGTTTTCAGAAACCGGGTCGGGTTATTCTATGTTTCCGGGTTTTGATGATTTTAGTGGCGAATTCTATGTTCCAGAGATGACAAATTTTGATTATGAAGAAGAGAACATGGATGGGGTGATAATTATTGATTCCTTCTTATGGGATTTTTAA 624 0.4439 MVKSNVEKTAAERSNSSLYRGVSKRKWGKYVSEIRLPNSRQRIWLGSFDTAEKAARAFDAATFCLRGSGGKFNFPNNPPDIPGARSMTHSEIQAAATRFANSEPREENSGRPDNKFVETPSSSEVTALLPMELSSPALSDTTVQTESDVIDNGLFSDLFSETGSGYSMFPGFDDFSGEFYVPEMTNFDYEEENMDGVIIIDSFLWDF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02646 207 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Trre3g02646 207 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trre3g02646 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 126 - -
Trre3g02646 207 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Trre3g02646 207 MobiDBLite consensus disorder prediction 98 121 - -
Trre3g02646 207 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Trre3g02646 207 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trre3g02646 207 PIRSF PTI6 103 196 IPR017392 GO:0003700
Trre3g02646 207 PIRSF PTI6 2 175 IPR017392 GO:0003700
Trre3g02646 207 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Trre3g02646 207 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Trre3g02646 207 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre3g02646 207 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02646 Trre-Chr3 27240925 27241548 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02646 14 207 AP2-EREBP Transcription Factor Family AT1G19210 44.231 2.01e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g02646 AP2 3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02646 - - mtr:11441685 306.219