Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02645 ATGGTAAAATCAAACGTGGAAAAAACTACGGCGGAAAGAAGTGATTCTTCATTATATAGAGGAGTAAGGAAGAGGAAGTGGGGAAAATATGTTTCTGAAATTAGATTACCAAACAGCCGCCAAAGAATTTGGTTAGGTTCATTCGACACCGCCGAAAAAGCGGCGCGTGCATTTGACGCGGCTACTTTCTGCTTACGTGGCACTGGTGCTAAGTTTAATTTCCCTAGTAATCCGCCGGATATTCCCGGAGCAAGGTTCATGACCCACTCTGAAATTCAAGCTGCTGCAACCCGTTTTGCAAATTCGGAGCCCCAACAGAAGTGTTCGGGTCGACCCGACAATGCTCTGACAGAAACACCATCTTCGTCGGAGGGGATGTGTTTACCCCGATTTTTAGTAAACAACCGCTAG 411 0.4623 MVKSNVEKTTAERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSFDTAEKAARAFDAATFCLRGTGAKFNFPSNPPDIPGARFMTHSEIQAAATRFANSEPQQKCSGRPDNALTETPSSSEGMCLPRFLVNNR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02645 136 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Trre3g02645 136 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Trre3g02645 136 MobiDBLite consensus disorder prediction 100 123 - -
Trre3g02645 136 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Trre3g02645 136 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trre3g02645 136 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Trre3g02645 136 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Trre3g02645 136 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Trre3g02645 136 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 110 - -
Trre3g02645 136 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Trre3g02645 136 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02645 Trre-Chr3 27235736 27236146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02645 17 123 AP2-EREBP Transcription Factor Family AT1G19210 64.486 6.10e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g02645 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02645 - - mtr:11441685 190.66