LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g02635	ATGGCAAAGAAACGTCAACCAACCACCACCACCGCCGCTGCCAAAGATGACCAACCACTCACCCCCGCCTCAAAGAGCAACAAACCGCCACCGTCCAAAAAGCCAGAAGAAGACAAAGTCGAAGAAATAGACGACGAAGAAGAGGTAATATCGGTAAATACTTCATCATCTGAAGGTGAAGAAGAAGACGATGAAGAAGAAGAAGAACAAACCCCTTCCAAAATCATTCAACATGCAAAATCGAAAAAAGATGAAGACAACGACGAAGAAGAAACCGATACTGATACTGATTCTGATGATGAAACTGTTCCACCTCCTAAACTCAAATCCATCAATTCAAAATCCAATGATGAAACCCTAAAATCAAAGTCTAAACCAAAATCCTCTGCTTCAACGGGCAGATCTGGAACCAAACGTTCCGCCGATGACGACACCAAACAATCAAAGAAGAAGAAAACAGTCGCTGCTGATGATGATGAGAAAGAGAAGGAGGTGGAAAACAAAAAGTCCGGTGATGATTTGAAAAAATTGTTTCAGAGAGTTTTCACCGAAGAAGATGAACTCACAATTCTCAAAGGTCTGGTCGATTTTAAAGAAGAAAAAGGGACTGATCCGCTCAAAAATCCTACAGCTTTTTATGAGGAAGTGAAAAAGTCGATTTCATTTCCGGTTACACTCGATCAACTGAAAGATAAGATGCGGAGGCTGAAAACTAAATTTGAGAATAAAATGAAAATTTGTAAAAATGGAAAGACTCCTACTTTTTCCAAACCTGTCGAGGAGGAAATGTTTGAATTTAGCAAAAAGATATGGGGTGGTACCGATGAAAATGGAAAGCCTAATGAGAAACAAGTTGCTGCTAAGAAACCACCAACAACAAAGAAATTGGTGATGGAACCTGATTTTCAGGTTGGAAGTACTAGTGATGGAAAGGAGAATCCTGGGTCGAGTTTCACTATGACTGAAATGCATCGATTCGACAAGAGTGTATCAGGTGTTTTTGGGGTGAGTATAGGTTTGCTTAAGAGTGAATCGAAGTTAATCGAGGAATCAAAGAGGGTAGAGTTGGAGAGAAGGTGGAAGGAGCTGCGAGTTGCTGAATTGAAGTGTACTGCGATGCGAGCTGAATTGACTGAGGATCATGCTAAATTGATATTGGAGGCGTTGCAGTCATCATCAAGCGACGATTAG	1191	0.4097	MAKKRQPTTTTAAAKDDQPLTPASKSNKPPPSKKPEEDKVEEIDDEEEVISVNTSSSEGEEEDDEEEEEQTPSKIIQHAKSKKDEDNDEEETDTDTDSDDETVPPPKLKSINSKSNDETLKSKSKPKSSASTGRSGTKRSADDDTKQSKKKKTVAADDDEKEKEVENKKSGDDLKKLFQRVFTEEDELTILKGLVDFKEEKGTDPLKNPTAFYEEVKKSISFPVTLDQLKDKMRRLKTKFENKMKICKNGKTPTFSKPVEEEMFEFSKKIWGGTDENGKPNEKQVAAKKPPTTKKLVMEPDFQVGSTSDGKENPGSSFTMTEMHRFDKSVSGVFGVSIGLLKSESKLIEESKRVELERRWKELRVAELKCTAMRAELTEDHAKLILEALQSSSSDD	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g02635	396	MobiDBLite	consensus disorder prediction	71	87	-	-
	Trre3g02635	396	MobiDBLite	consensus disorder prediction	1	170	-	-
	Trre3g02635	396	PANTHER	BNAANNG10740D PROTEIN-RELATED	54	388	IPR007592	GO:0006355
	Trre3g02635	396	MobiDBLite	consensus disorder prediction	137	170	-	-
	Trre3g02635	396	Pfam	Protein of unknown function, DUF573	178	272	IPR007592	GO:0006355
	Trre3g02635	396	Coils	Coil	226	246	-	-
	Trre3g02635	396	MobiDBLite	consensus disorder prediction	271	319	-	-
	Trre3g02635	396	MobiDBLite	consensus disorder prediction	1	23	-	-
	Trre3g02635	396	MobiDBLite	consensus disorder prediction	40	70	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g02635	Trre-Chr3	26977275	26978465	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g02635	92	388	GeBP Transcription Factor Family	AT1G61730	31.962	1.67e-29	115

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GeBP	Trre3g02635		DUF573	9.9e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g02635	-		-	tpra:123884521	397.512