Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02632 ATGTCTAGCTCATCGGAATTCTCAGAGGTTTCCGGCAACAAACCGGCGAGGTCACCGGAAAAGTTGACAACTTTCTCTCAAACTTGTAATTTGTTGAGTCAATATATTAAGGAAAAGGGTTGCTTCAAAGATCTTTCTCTTGGTATCACATGCAACAACACCGACCCAACTGGGTCTTCTGAAACTTCTTCTCAATCTGCAACAACCATGAATTTGTTTCCTACCATGGAAAACAACTTGACACCAAAGAACCTTACAACTATGGATTTGCTCACTCCACAAGCTACTTTGAACAATTCCAATGCTATTAAGGGGCCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTGATTGTAATCGACGATTTTCCTGCTGATAAAGCCCATGAACTTATGGCTTTTGCTAACAAAGGAGTTTCACAAAGTCAGAACAATTCTGTGTACACTTACACACAAAGCCAGCCTTCATTTCCTCCTAATTTGGTCCGACCTTCGGTTGATTCAATCGCTCCAGTTACTACTATGAACATAATCCCTAGTACTTCCACCGGTGCTGGCCCTCAAGTGCTTTCCAGACCTAATGTTTGCGATCTTCCAATTATGAGGAAAGCTTCACTTCATCGGTTTCTTGAGAAGAGAAAGGATAGAGTTGCTGCCAAAGCACCATATCAAGTTAATAAACCAGCTGAGTCCATGTCATGGCTTATGGGTGCCAAATCAACTCAAATATGA 738 0.4133 MSSSSEFSEVSGNKPARSPEKLTTFSQTCNLLSQYIKEKGCFKDLSLGITCNNTDPTGSSETSSQSATTMNLFPTMENNLTPKNLTTMDLLTPQATLNNSNAIKGPKAAQLTMFYNGQVIVIDDFPADKAHELMAFANKGVSQSQNNSVYTYTQSQPSFPPNLVRPSVDSIAPVTTMNIIPSTSTGAGPQVLSRPNVCDLPIMRKASLHRFLEKRKDRVAAKAPYQVNKPAESMSWLMGAKSTQI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02632 245 Pfam Jas motif 201 226 IPR018467 -
Trre3g02632 245 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 232 IPR040390 -
Trre3g02632 245 SMART tify_2 104 139 IPR010399 -
Trre3g02632 245 MobiDBLite consensus disorder prediction 1 20 - -
Trre3g02632 245 ProSiteProfiles Tify domain profile. 104 139 IPR010399 -
Trre3g02632 245 Pfam tify domain 106 138 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02632 Trre-Chr3 26895461 26897926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02632 1 237 Tify Gene Family AT1G19180 38.868 2.34e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre3g02632 tify 3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02632 K13464 - gmx:100801449 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02632 3 26895461 26897926 Trre3g02632 3 26895461 26897926 ECH
Trre15g05111 15 60815295 60816330 Trre3g02632 3 26895461 26897926 PCT