Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02623 ATGGCATTAGCCATTTCATCTACTTCATTATCAAGTTTTCCAAACAGAGAAATATGTCAAAAGGTATTTCACCAAGGAAAAACACCAAACTTATGGTTAAGCAGTAGCAACAACAGAAGAAGAAAACTAACAATTAGAAATGCAAAAAAAGGAGTGTCAGATGTGTGTGTACCACTCCCTCCTGACAGGCCATTGTGGTTTCCTGGTAGTTCTCCTCCTGAATGGCTAGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTTCTGATCCAGAGTTACTAAAATGGTTTGCACAAGCAGAACTAATGCATTCAAGATGGGCAATGTTAGGAGTAACAGGAATCCTCATCCCAGAAATACTCGACAATATGGGTTACGTAAAAAACTTCTCATGGTTCAATGCAGGTTCAGTCCAATATTTTGCAGACCCAACAACACTATTCATTGTCCAACTCGCTTTAATGGGTTGGGCTGAGGGTAGAAGATGGGCCGATATTGTTAATCCGGGTAGCGTTGATATTGAGCCCAAGTTGCCAAATAGGCCGAACCCAAAACCAGATGTTGGTTATCCTGGTGGGCTTTGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGAAGACTTGCTATGCTTGCTTTTCTTGGATTTTGTTTTCAAGCTGTTTATACTGGTGGTAGTCCTCTTGATAATTTGATGGCTCATCTTGCTGATCCTGGTCATGTCAACATTTTCTCGGCTTTCACTTCAGGGTAG 807 0.4188 MALAISSTSLSSFPNREICQKVFHQGKTPNLWLSSSNNRRRKLTIRNAKKGVSDVCVPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLGVTGILIPEILDNMGYVKNFSWFNAGSVQYFADPTTLFIVQLALMGWAEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYTGGSPLDNLMAHLADPGHVNIFSAFTSG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02623 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 21 266 IPR001344 GO:0009765|GO:0016020
Trre3g02623 268 SUPERFAMILY Chlorophyll a-b binding protein 62 266 - -
Trre3g02623 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Trre3g02623 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
Trre3g02623 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02623 Trre-Chr3 26758328 26760863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02623 56 266 Chloroplast and Mitochondria Gene Families AT3G61470 66.351 2.27e-102 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02623 K08908 - gmx:100800374 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02623 3 26758328 26760863 Trre3g02623 3 26758328 26760863 ECH