Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02621 ATGGCCGCTGCTGCTGTTCTCCTCCTCCTCATCTCTCTCTCTTTTCTTTCTCTCTCCACCGCGGCGCTACCACCGTCAGAAACACAATCTCTCCTTAAACTAAAACAATCCTTAACAAATTCTGACAAAATATTACCATCATGGATCCCCAATATCTCCCCGTGTTCCGGCACATGGATCGGTGTTGTCTGCTTCAACAATATCATCAGCGGCCTTCATCTCTCCGACCTCAGCCTCTCCGGAACAATAGATGTCGATGCCATTGCCGAGATTCGCGGCTTAAGAACACTTAGTTTTGTTAACAACTCTTTCTCTGGTCCTATTCCTCAGTTCAACAAACTTGGCACCATCAAATCTCTTCTTCTTCAACAAAATCAATTCACCGGTCCAATTCCGCAAGATTTCTTCGCACAATTAACTTCTTTGAAAAAAGTATGGCTCTCTGGTAACAAATTCTCCGGAAATATTCCGGTTTCTTTAACGGAACTCGATCTCCTCAAAGAATTGCACCTCGAAGGTAACCAATTCTCCGGTCAGTTACCGGATCTAAAACAAGATATCAAATCATTTGATGTTTCGAATAACCAACTAGAAGGTCCTATCCCTGAAAGTCTCGTGAAATTCGGTCCTGTTTCGTTTGCCGGAAATGCAGGCCTGTGCGGAAAACCGCTAGAAAAGCAATGTGACGGTTCATCTTCTTCTTCGTTTTTGGATAGTGTTACCGATGCTCCAACGGAAAACGGCGACGGGTCTGGTTTGGCGTCTAAAGTGATGGTAATTCTGTTATTGGCAGTTGTAGCAGCGGTTATACTTTTGTTTTTGAAATCGAGGCAGAGAAGACGAGACGATGATTTTAGCATTGTGAGCCGAGACTCTAGCGTTGACGAGGTGATGCAGGTGCATGTACCGATAAGTAGAACTTCTTCCGCGTCAGAGAGAGTTGGAAGACGGAACGTGGGAGAATCTTCCAAGAGAAGCGGAATGGGGGGTGGAAATAGAAATGGGATAGGTGATTTAGTGATGGTGAATGATGAGAAGGGTTCGTTTGGTTTGCAGGATTTGATGAAAGCTGCTGCTGAGGTATTAGGGAACGGTGGATTGGGTTCGGCTTATAAAGCCGCTATGGCGACCGGGTTGAGTGTGGTTGTGAAGAGGATGAGGGATATGAATAAAATTGGGAAAGATGTGTTTGATGCTGAAATGAGACAATTTGGGAGGATTAGACATCCTAATATTTTGACTCCTTTAGCTTATCATTATAGGAGAGAGGAAAAGCTTTTTGTTACCGAGTATATGCCGAAAGGAAGTTTGTTATATGTCTTGCACGGTGACAGAGGAACATCCCATGGAGATTTAACATGGCCTATCCGTTTAAAGATTGCTAAAGGAATTGCTAGAGGGTTAAGCTTCCTTTACACTGAATTTTCAACCTATGATTTACCTCATGGAAACCTTAAATCAAGCAATGTTCTACTAACAAATGAATATGAACCACTTTTAAGTGATTATGCTTTTCAACCACTAATCAATCCTAGCATTGCAGTACAATCAATGTTTGCATACAAAACACCAGATTACATTCAAAACCAGAAGCTTTCGCAGAAAGCCGATGTTTATTGCCTTGGAATCATCATTCTCGAAATCATTACAGGGAAATTCCCTTCTCAATATCATAGTAATGGCAAAGGTGGGACTGATGTTGTTCAATGGGTCCTCACTGCAATTTCGGAGAGACGAGAAGCTGAATTGATTGATCCTGAGTTGCTAGATAATGCATCAAATCCGGTCAATAATATGCTGCAGCTTCTCTTAATTGGTGCTGCTTGTACCGAAAACAACCCGGAACAAAGAGTGCATATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACCACTCTAA 1899 0.4255 MAAAAVLLLLISLSFLSLSTAALPPSETQSLLKLKQSLTNSDKILPSWIPNISPCSGTWIGVVCFNNIISGLHLSDLSLSGTIDVDAIAEIRGLRTLSFVNNSFSGPIPQFNKLGTIKSLLLQQNQFTGPIPQDFFAQLTSLKKVWLSGNKFSGNIPVSLTELDLLKELHLEGNQFSGQLPDLKQDIKSFDVSNNQLEGPIPESLVKFGPVSFAGNAGLCGKPLEKQCDGSSSSSFLDSVTDAPTENGDGSGLASKVMVILLLAVVAAVILLFLKSRQRRRDDDFSIVSRDSSVDEVMQVHVPISRTSSASERVGRRNVGESSKRSGMGGGNRNGIGDLVMVNDEKGSFGLQDLMKAAAEVLGNGGLGSAYKAAMATGLSVVVKRMRDMNKIGKDVFDAEMRQFGRIRHPNILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTSHGDLTWPIRLKIAKGIARGLSFLYTEFSTYDLPHGNLKSSNVLLTNEYEPLLSDYAFQPLINPSIAVQSMFAYKTPDYIQNQKLSQKADVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELLDNASNPVNNMLQLLLIGAACTENNPEQRVHMKEAIRRIEEVPL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02621 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 631 IPR046959 -
Trre3g02621 632 SUPERFAMILY Protein kinase-like (PK-like) 360 627 IPR011009 -
Trre3g02621 632 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Trre3g02621 632 CDD STKc_IRAK 362 629 - -
Trre3g02621 632 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Trre3g02621 632 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Trre3g02621 632 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Trre3g02621 632 Gene3D Transferase(Phosphotransferase) domain 1 432 631 - -
Trre3g02621 632 ProSiteProfiles Protein kinase domain profile. 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02621 632 Pfam Protein kinase domain 360 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02621 632 SUPERFAMILY L domain-like 25 208 - -
Trre3g02621 632 MobiDBLite consensus disorder prediction 307 334 - -
Trre3g02621 632 Gene3D Ribonuclease Inhibitor 136 230 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02621 Trre-Chr3 26640946 26643601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02621 4 632 Receptor kinase-like Gene Family AT3G42880 48.998 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre3g02621 Pkinase 2.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02621 - - gmx:100790660 823.157