Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02552 ATGAAAATCAAATGGAAATCAATTTTCCCAGCAAGTTGTTTCAAAGGAGAGTATCCATCACCAAATCCAAAAAAAGTGGTTTCAACAAAACCAAGAAGCTCTTCAACATCAACTCATAGGATTTCAATAGAAGAAATGAGTTATCCAAACACAACTCAAGAGGATTTGTCTATTTCTTTAGTAGGATCTAATCTTCATGTGTTCACAGTTGCTGAGCTTAAAGTTATAACACAACACTTTTCTTCTAGTAATTTTATTGGTGAAGGTGGATTTGGGCCTGTGCATAAAGGGTTCATTGAAGATAGGGTTAGGCCTGGTTTGAAGGCTCAACCTGTTGCTGTTAAGCTCTTGGACTTGGAAAGTAAACAAGGTCATAAAGAGTGGTTGACCGAAGTTGTTGTTCTGGGGCAATTAAGGCATCCACATCTTGTGAAGCTAATAGGATATTGTTGTGAAGATGAACATAGACTTTTGGTATATGAATATTTACCAAGAGGCAGCTTGGAAAATCAATTATTTAGAAGATTTTCAGCATCACTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTTTAGCTTTTCTTCATGATGCAGAGCAACCAGTTATTTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCCGATTATAATGCAAAACTCTCTGACTTTGGGTTGGCAAAAGATGGTCCTGAAGGAGATGACACCCACGTTTCAACAAGAGTTATGGGTACTCAAGGCTATGCTGCCCCAGAATATGTCATGACAGGTCACTTGACGGCCAAGAGTGATGTGTACAGCTTTGGAGTAGTTTTGTTGGAATTACTAACAGGGAGAAAGTCAGTGGATAAAAATCGTCCTCAAAGGGAACAAAACCTAGTAGATTGGGCAAGACCAATGTTAATTGATCCAAGAAAACTCAGTAAATTAATGGATCCTAAACTTGAAGGACAATATTCTGAAATGGGTACTAAAAAAGCAGCTGCATTAGCTTATCAATGTCTTAGCCATAGACCTAAGAGTAGACCAACAATGAGCCAAGTGGTTAAGATTTTGGAACCCTTACAAGATTTTGATGATATTCCAATTGGACCTTTTGTTTACACTGTTCCAGTTGATAATAATGGAGGAGTTAAAGAAAAAGATCAAGCAAAGGAATGTGAAACACCTAAGGAGAGGAAAAGGGAAAATGGTCAGTATCGTAGGAATGGTCATAGACACCATCCACTTAAATCCCCGAGGTCGCCAAACCCTCAATCACAATCACGGCCACAGTCACAGCCATCGCCACGACAACAATCACAACCGTCACCACGGCAACAGTCACAATCGTCACCACGGCCACGTCTGCAGGTTGACAAATACCAAAATGGCAGGGGAAGTTCGTCAAATTCTCCTTCGCCGCGAAACATAGCTTAA 1434 0.3975 MKIKWKSIFPASCFKGEYPSPNPKKVVSTKPRSSSTSTHRISIEEMSYPNTTQEDLSISLVGSNLHVFTVAELKVITQHFSSSNFIGEGGFGPVHKGFIEDRVRPGLKAQPVAVKLLDLESKQGHKEWLTEVVVLGQLRHPHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHDAEQPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGRKSVDKNRPQREQNLVDWARPMLIDPRKLSKLMDPKLEGQYSEMGTKKAAALAYQCLSHRPKSRPTMSQVVKILEPLQDFDDIPIGPFVYTVPVDNNGGVKEKDQAKECETPKERKRENGQYRRNGHRHHPLKSPRSPNPQSQSRPQSQPSPRQQSQPSPRQQSQSSPRPRLQVDKYQNGRGSSSNSPSPRNIA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02552 477 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672|GO:0006468
Trre3g02552 477 MobiDBLite consensus disorder prediction 383 404 - -
Trre3g02552 477 PANTHER OS01G0588500 PROTEIN-RELATED 40 361 - -
Trre3g02552 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Trre3g02552 477 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02552 477 MobiDBLite consensus disorder prediction 20 40 - -
Trre3g02552 477 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Trre3g02552 477 MobiDBLite consensus disorder prediction 418 477 - -
Trre3g02552 477 CDD STKc_IRAK 86 360 - -
Trre3g02552 477 SUPERFAMILY Protein kinase-like (PK-like) 65 373 IPR011009 -
Trre3g02552 477 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Trre3g02552 477 MobiDBLite consensus disorder prediction 375 477 - -
Trre3g02552 477 MobiDBLite consensus disorder prediction 26 40 - -
Trre3g02552 477 FunFam Probable serine/threonine-protein kinase PBL8 163 371 - -
Trre3g02552 477 Gene3D Phosphorylase Kinase; domain 1 41 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02552 Trre-Chr3 25386343 25389353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02552 66 357 Glycoside Hydrolase AT3G07070 54.915 1.15e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre3g02552 PK_Tyr_Ser-Thr 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02552 - - cam:101488466 727.628