Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02506 ATGTCAATTGATAATAGTAGTGTTGGGTCCAATGATTCTCATACCTGCATATTGGATCACCAAGGGTTGAAGAGACGTGACAACGATAACTATTCGGTTGCGCATAGTGCAAATCGTCAAGGAAGAGTCGCACACGCATTGAGTGACGATGCTTTAGCTCAAGCTCTAATGGACAGTAATTCTCTGACTAAAGGGCTTGAAAATTTTGAAAAGTGGACAATTGATTTGAGGAAACTAAATATGGGTGAGGCTATTGCTCAAGGAGCTTTCGGGAAAGTCTACAAAGGTACTTACAATGGGGAGGATGTTGCTATCAAAATCATGGAGAGGCCTGAAAATGACATTTCAAAGGCTCAATTGATGGAACAACAGTTTCATCGGGAGGTCATGATGCTAGCTACACTGAAGCATGCCAACATAGTTCGTTTTATAGGTGCATGCCGTAAGCCTATGGTGTGGTGCATTGTTACTGAGTATGCTAAGGGTGGATCGGTTCGACAATTATTAACAAATCGTCGAAACCGAAAAGTTCCCCTCAAACTAGCTATCAAACAAGCTTTGGATGTTGCAAGAGGCATGGCATATGTTCATGGTCTTGGATTTATCCACAGGGACTTGAAATCTGACAACCTGTTGATTTTTGGTGACAAGTCGATCAAAATTGCTGACTTTGGAGTTGCTCGGATTGATGTGCAAACTGAAGGAATGACTCCCGAGACTGGAACATATCGTTGGATGGCTCCGGAGATGATCCAACATAGAGCTTACACACTGAAAGTCGATGTATATAGCTTTGGGATTGTTTTGTGGGAACTGATCACTGGTATGCTTCCCTTTCAGAACATGTCACCAGTACAGGTAGCACTTGCAGTTGTCAAAGGAAATGTTCGACCGATCTTGCCCAATGATTGTTTGCCTGTTCTCCATGATATTGTGACAAAGTGTTGGGATTCCAACCCTGATGTCAGACCACCCTTCACTGAAATTGTTGCAATGCTTGAAAAAGCTGAGATTGAGGTCATGACAACAGTTCGAAAGGCGAGGTTCAGGTGTTGCATGACCCAACCAATGACTTTGTAG 1080 0.4296 MSIDNSSVGSNDSHTCILDHQGLKRRDNDNYSVAHSANRQGRVAHALSDDALAQALMDSNSLTKGLENFEKWTIDLRKLNMGEAIAQGAFGKVYKGTYNGEDVAIKIMERPENDISKAQLMEQQFHREVMMLATLKHANIVRFIGACRKPMVWCIVTEYAKGGSVRQLLTNRRNRKVPLKLAIKQALDVARGMAYVHGLGFIHRDLKSDNLLIFGDKSIKIADFGVARIDVQTEGMTPETGTYRWMAPEMIQHRAYTLKVDVYSFGIVLWELITGMLPFQNMSPVQVALAVVKGNVRPILPNDCLPVLHDIVTKCWDSNPDVRPPFTEIVAMLEKAEIEVMTTVRKARFRCCMTQPMTL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02506 359 FunFam Serine/threonine-protein kinase isoform 1 69 161 - -
Trre3g02506 359 FunFam serine/threonine-protein kinase HT1 162 355 - -
Trre3g02506 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Trre3g02506 359 SUPERFAMILY Protein kinase-like (PK-like) 63 333 IPR011009 -
Trre3g02506 359 MobiDBLite consensus disorder prediction 1 21 - -
Trre3g02506 359 Gene3D Transferase(Phosphotransferase) domain 1 162 355 - -
Trre3g02506 359 SMART serkin_6 79 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02506 359 ProSiteProfiles Protein kinase domain profile. 79 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02506 359 CDD STKc_MAP3K-like 85 333 - -
Trre3g02506 359 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Trre3g02506 359 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 45 336 - -
Trre3g02506 359 Pfam Protein tyrosine and serine/threonine kinase 79 333 IPR001245 GO:0004672|GO:0006468
Trre3g02506 359 MobiDBLite consensus disorder prediction 1 17 - -
Trre3g02506 359 PRINTS Tyrosine kinase catalytic domain signature 241 251 IPR001245 GO:0004672|GO:0006468
Trre3g02506 359 PRINTS Tyrosine kinase catalytic domain signature 195 213 IPR001245 GO:0004672|GO:0006468
Trre3g02506 359 PRINTS Tyrosine kinase catalytic domain signature 260 282 IPR001245 GO:0004672|GO:0006468
Trre3g02506 359 PRINTS Tyrosine kinase catalytic domain signature 304 326 IPR001245 GO:0004672|GO:0006468
Trre3g02506 359 PRINTS Tyrosine kinase catalytic domain signature 157 170 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02506 Trre-Chr3 24788154 24789233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02506 1 359 MAP Kinase Kinase Kinase AT2G24360 76.323 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre3g02506 PK_Tyr_Ser-Thr 4.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02506 - - gmx:100788536 631.328