Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02495 ATGAATATGAACAAGAACAAGTTCCCTTTTACTCAATCACAATGGCAAGAACTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTGTTTTCAACATCAGAAAAAGCTACTTGGACAGTCCTCTCTCTTCAAGACTTTTGCTTAACCAGCCACAATCACACTATGGATGGAGCTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCTGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCAAAAACAACACCAACAAATAATAATAATAATATTAATAATGCTTCAACATTTGGAATCTCATCAATTACCAAAAATACCCCTGTATCAATAACTAATTCTTCTTTGTCCTTTGATACACAAAATCATCACCAAAACTACCCTCAAAATTCCTTTATGTATCCTCATACAACATCAAGGTCATTGTCATCATCATCATTTGGTATTGGTTTGTCCTTTGAAGACAATAGTGCTCCCTTGTTTCTTGACACTAATACAGATTACAGGTATGTGTATGGACAGAAAGAAGAGGTAGATAAGTATGCATTCTTCAAAGAACCTTCTGGTAGCACTACTATGAAAAGCTTCTCTTCTTCATCAATGGAACATGATCCTTGGCAACTAACACCACTCACTATGAGTTCTTCCTCGTCTTCGTCATCTTTGAGACAGAGAAGCTTTTCATCTTTGTCCAATGATTGCTCTTCCTTTTTGCAACTTCAGAGTCAAAATGAACACTCAAAACAGCAAGAGCAAGATGAACCTCAAAAAACCGTTCATCGATTCTTTGACGAATGGCCACACAAAGAGAGATATCAATGGCTTGATTTGGATGATAAATCATCCACTACTCAACTCTCAATTTCTATTCCATCTTCAACTCATGAATATCCAACTTTCACCTCAAGAAATCACCATGGTAATTAA 1053 0.3628 MNMNKNKFPFTQSQWQELEHQALIYKYMASGISIPPDLVFNIRKSYLDSPLSSRLLLNQPQSHYGWSYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEISKTTPTNNNNNINNASTFGISSITKNTPVSITNSSLSFDTQNHHQNYPQNSFMYPHTTSRSLSSSSFGIGLSFEDNSAPLFLDTNTDYRYVYGQKEEVDKYAFFKEPSGSTTMKSFSSSSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSLSNDCSSFLQLQSQNEHSKQQEQDEPQKTVHRFFDEWPHKERYQWLDLDDKSSTTQLSISIPSSTHEYPTFTSRNHHGN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02495 350 MobiDBLite consensus disorder prediction 328 350 - -
Trre3g02495 350 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02495 350 MobiDBLite consensus disorder prediction 109 135 - -
Trre3g02495 350 Pfam QLQ 9 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02495 350 PANTHER GROWTH-REGULATING FACTOR 5 8 337 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre3g02495 350 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02495 350 MobiDBLite consensus disorder prediction 121 135 - -
Trre3g02495 350 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Trre3g02495 350 Pfam WRC 79 121 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02495 Trre-Chr3 24350646 24352834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02495 9 245 GRF Transcription Factor Family AT3G13960 42.349 7.41e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre3g02495 WRC 7.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02495 - - gmx:100781613 429.483