Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02494 ATGAACAAGAACAAGTTCCCTTTTACTCAATCACAATGGCAAGAACTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTGTTTTCAACATCAGAAAAAGCTACTTGGACAGTCCTCTCTCTTCAAGACTTTTGCTTAACCAGCCACAATCACACTATGGATGGAGCTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCTGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCAAAAACAACACCAACAAATAATAATAATAATATTAATAATGCTTCAACATTTGGAATCTCATCAATTACCAAAAATACCCCTGTATCAATAACTAATTCTTCTTTGTCCTTTGATACACAAAATCATCACCAAAACTACCCTCAAAATTCCTTTATGTATCCTCATACAACATCAAGGTCATTGTCATCATCATCATTTGGTATTGGTTTGTCCTTTGAAGACAATAGTGCTCCCTTGTTTCTTGACACTAATACAGATTACAGGAACAGGTATGTGTATGGACAGAAAGAAGAGGTAGATAAGTATGCATTCTTCAAAGAACCTTCTGGTAGCACTACTATGAAAAGCTTCTCTTCTTCATCAATGGAACATGATCCTTGGCAACTAACACCACTCACTATGAGTTCTTCCTCGTCTTCGTCATCTTTGAGACAGAGAAGCTTTTCATCTTTGTCCAATGATTGCTCTTCCTTTTTGCAACTTCAGAGTCAAAATGAACACTCAAAACAGCAAGAGCAAGATGAACCTCAAAAAACCGTTCATCGATTCTTTGACGAATGGCCACACAAAGAGAGATATCAATGGCTTGATTTGGATGATAAATCATCCACTACTCAACTCTCAATTTCTATTCCATCTTCAACTCATGAATATCCAACTTTCACCTCAAGAAATCACCATGATGGTTGA 1053 0.3666 MNKNKFPFTQSQWQELEHQALIYKYMASGISIPPDLVFNIRKSYLDSPLSSRLLLNQPQSHYGWSYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEISKTTPTNNNNNINNASTFGISSITKNTPVSITNSSLSFDTQNHHQNYPQNSFMYPHTTSRSLSSSSFGIGLSFEDNSAPLFLDTNTDYRNRYVYGQKEEVDKYAFFKEPSGSTTMKSFSSSSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSLSNDCSSFLQLQSQNEHSKQQEQDEPQKTVHRFFDEWPHKERYQWLDLDDKSSTTQLSISIPSSTHEYPTFTSRNHHDG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02494 350 MobiDBLite consensus disorder prediction 328 350 - -
Trre3g02494 350 MobiDBLite consensus disorder prediction 107 133 - -
Trre3g02494 350 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre3g02494 350 PANTHER GROWTH-REGULATING FACTOR 5 7 337 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre3g02494 350 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02494 350 MobiDBLite consensus disorder prediction 119 133 - -
Trre3g02494 350 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02494 350 Pfam WRC 77 119 IPR014977 -
Trre3g02494 350 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02494 Trre-Chr3 24350364 24352828 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02494 7 245 GRF Transcription Factor Family AT3G13960 42.349 3.05e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre3g02494 WRC 7.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02494 - - gmx:100781613 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02494 3 24350364 24352828 Trre3g02494 3 24350364 24352828 ECH
Trre15g05141 15 61055161 61057083 Trre3g02494 3 24350364 24352828 PCT