Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02493 ATGAACAAGAACAAGTTCCCTTTTACTCAATCACAATGGCAAGAACTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTGTTTTCAACATCAGAAAAAGCTACTTGGACAGTCCTCTCTCTTCAAGACTTTTGCTTAACCAGCCACAATCACACTATGGATGGAGCTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCTGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGTGGAAATTTCAAAAACAACACCAACAAATAATAATAATAATATTAATAATGCTTCAACATTTGGAATCTCATCAATTACCAAAAATACCCCTGTATCAATAACTAATTCTTCTTTGTCCTTTGATACACAAAATCATCACCAAAACTACCCTCAAAATTCCTTTATGTATCCTCATACAACATCAAGGTCATTGTCATCATCATCATTTGGTATTGGTTTGTCCTTTGAAGACAATAGTGCTCCCTTGTTTCTTGACACTAATACAGATTACAGGTATGTGTATGGACAGAAAGAAGAGGTAGATAAGTATGCATTCTTCAAAGAACCTTCTGGTAGCACTACTATGAAAAGCTTCTCTTCTTCATCAATGGAACATGATCCTTGGCAACTAACACCACTCACTATGAGTTCTTCCTCGTCTTCGTCATCTTTGAGACAGAGAAGCTTTTCATCTTTGTCCAATGATTGCTCTTCCTTTTTGCAACTTCAGAGTCAAAATGAACACTCAAAACAGCAAGAGCAAGATGAACCTCAAAAAACCGTTCATCGATTCTTTGACGAATGGCCACACAAAGAGAGATATCAATGGCTTGATTTGGATGATAAATCATCCACTACTCAACTCTCAATTTCTATTCCATCTTCAACTCATGAATATCCAACTTTCACCTCAAGAAATCACCATGATGGTTGA 1047 0.3658 MNKNKFPFTQSQWQELEHQALIYKYMASGISIPPDLVFNIRKSYLDSPLSSRLLLNQPQSHYGWSYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEISKTTPTNNNNNINNASTFGISSITKNTPVSITNSSLSFDTQNHHQNYPQNSFMYPHTTSRSLSSSSFGIGLSFEDNSAPLFLDTNTDYRYVYGQKEEVDKYAFFKEPSGSTTMKSFSSSSMEHDPWQLTPLTMSSSSSSSSLRQRSFSSLSNDCSSFLQLQSQNEHSKQQEQDEPQKTVHRFFDEWPHKERYQWLDLDDKSSTTQLSISIPSSTHEYPTFTSRNHHDG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02493 348 MobiDBLite consensus disorder prediction 326 348 - -
Trre3g02493 348 PANTHER GROWTH-REGULATING FACTOR 5 7 335 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre3g02493 348 MobiDBLite consensus disorder prediction 107 133 - -
Trre3g02493 348 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Trre3g02493 348 Pfam WRC 77 119 IPR014977 -
Trre3g02493 348 SMART QLQ_2 6 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02493 348 MobiDBLite consensus disorder prediction 119 133 - -
Trre3g02493 348 ProSiteProfiles QLQ domain profile. 7 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre3g02493 348 Pfam QLQ 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02493 Trre-Chr3 24350364 24352828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02493 7 130 GRF Transcription Factor Family AT3G13960 64.179 8.56e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre3g02493 WRC 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02493 - - gmx:100781613 433.721