Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02487 ATGGCTCGAGTGAGGACTACTCCACGACCAAGATACCAGTTAGTACCGAAACGAACGGTGCGAAAACCGGTTCCCCCTATGCAAAACAACATTTGCACTGGACAGAGTCCAGCGAAGGAAATCCAATATCGCGGTGTTCGAAAGCGACCAAGGGGTCGATATGGTGCAGAAATCAGAGACCCGGTTAAAAGCAAACGTCTATGGTTAGGAACTTTTAAAACGGCTGCAGAAGCAGCACGTGCTTATGATAAAAAAGCAGTTGTATTCCATGGGGAAATGGCTAAAACTAATTTCCCAATCTCGGAATACATATTTGATGATGCTCAGATTCCTCCTGCTGCTCCTCCTGTTCAGATTCCTCAATCTACTGCTCCTCTGGCTAACGATTGTGAGACTAGCTAA 402 0.4602 MARVRTTPRPRYQLVPKRTVRKPVPPMQNNICTGQSPAKEIQYRGVRKRPRGRYGAEIRDPVKSKRLWLGTFKTAAEAARAYDKKAVVFHGEMAKTNFPISEYIFDDAQIPPAAPPVQIPQSTAPLANDCETS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02487 133 MobiDBLite consensus disorder prediction 114 133 - -
Trre3g02487 133 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 112 - -
Trre3g02487 133 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre3g02487 133 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre3g02487 133 MobiDBLite consensus disorder prediction 19 40 - -
Trre3g02487 133 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Trre3g02487 133 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Trre3g02487 133 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre3g02487 133 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Trre3g02487 133 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre3g02487 133 Gene3D AP2/ERF domain 41 101 IPR036955 GO:0003700|GO:0006355
Trre3g02487 133 Pfam AP2 domain 43 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02487 Trre-Chr3 24237387 24237788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02487 31 103 AP2-EREBP Transcription Factor Family AT1G03800 60.274 7.57e-27 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre3g02487 AP2 1.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02487 K09286 - nto:104085503 98.5969