Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02479 ATGGCGGTGAATCTCACGGCGAACGCTATTCCGGCGATAATCAACGGCGACGTTGACGCGAAACCGTTGGTTCAAGTTCTCGACATTGCAACAATCAAAAGCACCAAAAACTCTCAGCAAGAGAGATACCGTCTTCTTCTTTCCGACTCCGTTTCATCTCACCACGCCATGCTTGCTGCTCAACTCAACGAGAAAGTGAAAACCGGTCGTTTTAAGAAAGGAACAATCGTTCAGCTTGTCGATTACATATGCACTCCTGTTCAGAATCGCAAGATTATTATGGTCCTCAACATGGAATCCATAATACCTGATTGTGAGATCATTGGTAATCCAAAGTCATTTGTGGATTCAGAATTACCTGTTCAGAAATCATTGTATGATAACACTGTGCAGAGTTCGTCCAGTGGTAATAATAATTTGGCTGCTCAAAATAGAGGCAGTAATGTGCAGAATTTTAGGCCAACAGTTCAACCTGCATACAAACCTCCTCCGGTTTACAAAGGCCGTGGTGCCGTTGTGAAAAACGAGGCGCCGTCACGTGTAATACCGATAGCTGCTTTAAATCCATATCAAGGTAGGTGGGCCATCAAGGCAAGGGTTACTGCTAAAGGGGATTTGCGCCGCTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTCGATCTCCTTGATTCTGATGGAGGTGAAATTCGTGTAACATGTTTTAACGCTGTTGTTGACCGCTTCTATGATGCAATTGAGGTTGGTAAAGTTTACTTGATATCCAAAGGTAACTTGAAACCTGCACAGAAGAATTATAACCATTTGAAGAATGACTGGGAAATTATGCTGGATTTAAATTCAACTGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAATTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTTGAGAATAACGCTATCCTTGATGTTATTGGGGTTGTGACATATGTGAGTCCTTCAGTTCCCATCTCAAGGAAGAATGGAATGGAAACACTGAGAAGGATTTTGAATATAAAGGACAATTCTGGCAGGACTGTTGAGCTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTGCAAGAGATGGTGGATGCTGGGGTTTTCCCCATTATGGCAGTAAAGTCGGGGAAGGTTAATGAATTCAGTGGGAAGTCCATAGGCTCTATTTCTACTACTCAGCTTTTCATAAATCCAGATTTCCCTGAGGCTCAGAGCTTAAGAATCTGGTTTGATCAAGTCGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATTACTCATGCAGGACCCAAGAATGAGATACGCAAAACTGTGTCTCAAATCAAAGATGAAGGTCTGGGGCGGTCAGACAAACCAGACTGGATAACATTGAGGGCAGCCATATCATTCATTAAGACTGATACATTTTGTTACACGGGTTGCCCTCTGATGATTGGAGATCGGCAGTGCAATAAGAAAGTGACAAGGTCAGGAGACACAAGTTGGCATTGTGATAGATGCAACCAGGAGTTTGAGGAATGCGACTATCGATACCTTCTCCAAGCTCAAATCCTGGATAATACTGGATTAACTTGGGTTACTGCTTTCCAGGAAGTAGGGGAAGAGATTATGGGGTACTCAGCAAAAGATCTGTATGTACTGAAGTATGAACAGGAGGATGATGAGAAGTTTGGAAATATAATCAAGAGTAGACTCTTTAACCAATTTGTATTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAGCAGAAGGTGAAGATTACAGTAGTTAAGGCAGATAAGGTGAATTATTCTTCAGAGAGTAGATACATGCTTGATTTCATTTCCAAATTCTGTGGGCAGTAA 1884 0.422 MAVNLTANAIPAIINGDVDAKPLVQVLDIATIKSTKNSQQERYRLLLSDSVSSHHAMLAAQLNEKVKTGRFKKGTIVQLVDYICTPVQNRKIIMVLNMESIIPDCEIIGNPKSFVDSELPVQKSLYDNTVQSSSSGNNNLAAQNRGSNVQNFRPTVQPAYKPPPVYKGRGAVVKNEAPSRVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAIEVGKVYLISKGNLKPAQKNYNHLKNDWEIMLDLNSTVELCPDEDGSIPRQQFSFRPISDIENVENNAILDVIGVVTYVSPSVPISRKNGMETLRRILNIKDNSGRTVELTLWGEFCNREGQKLQEMVDAGVFPIMAVKSGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRIWFDQVGKDSASLSISKDITHAGPKNEIRKTVSQIKDEGLGRSDKPDWITLRAAISFIKTDTFCYTGCPLMIGDRQCNKKVTRSGDTSWHCDRCNQEFEECDYRYLLQAQILDNTGLTWVTAFQEVGEEIMGYSAKDLYVLKYEQEDDEKFGNIIKSRLFNQFVFRLKIKEELYGDEQKVKITVVKADKVNYSSESRYMLDFISKFCGQ 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02479 627 Pfam Replication protein A OB domain 304 408 IPR031657 -
Trre3g02479 627 CDD RPA1_DBD_B 315 422 - -
Trre3g02479 627 Pfam OB-fold nucleic acid binding domain 195 268 IPR004365 GO:0003676
Trre3g02479 627 Gene3D - 180 290 IPR012340 -
Trre3g02479 627 Gene3D - 3 115 IPR012340 -
Trre3g02479 627 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Trre3g02479 627 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre3g02479 627 FunFam Replication protein A subunit 180 289 - -
Trre3g02479 627 Gene3D - 293 432 IPR012340 -
Trre3g02479 627 NCBIfam replication factor-a protein 1 (rpa1) 4 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g02479 627 PANTHER REPLICATION FACTOR A 1, RFA1 194 602 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g02479 627 FunFam Replication protein A subunit 293 431 - -
Trre3g02479 627 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Trre3g02479 627 SUPERFAMILY Nucleic acid-binding proteins 181 293 IPR012340 -
Trre3g02479 627 SUPERFAMILY Nucleic acid-binding proteins 447 624 IPR012340 -
Trre3g02479 627 FunFam Replication protein A subunit 432 624 - -
Trre3g02479 627 FunFam Replication protein A subunit 4 115 - -
Trre3g02479 627 SUPERFAMILY Nucleic acid-binding proteins 298 425 IPR012340 -
Trre3g02479 627 Gene3D - 433 625 IPR012340 -
Trre3g02479 627 Pfam Replication factor-A C terminal domain 466 616 IPR013955 -
Trre3g02479 627 CDD RPA1_DBD_C 450 623 IPR047192 -
Trre3g02479 627 CDD RPA1_DBD_A 183 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02479 Trre-Chr3 24139100 24142099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02479 26 623 Core DNA Replication Machinery Family AT2G06510 66.987 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02479 K07466 - gmx:100792409 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02479 3 24139100 24142099 Trre3g02479 3 24139100 24142099 ECH