Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02474 ATGGTAGAATTCGATGTATCTATTGATGGTGATTCGAATGATGTTCATTCAACTGCTGGTAATACTAATGAAGCTGAAGATTTCAACTATTCGGTATCCAGTGGGCAGGGTGGGTCGGATGATGATGAAGGTGATGATGATCATGAGGATGAGGATGAGGATGAGGATGAGGATGACGAGGATGATGGCAATGCCAATGAATTTGATGATTCTGCATTTGTAGGCAATACGGTACGTATTAATTCTATGACTTCTGAAGAAATACGTGCTTTGGAATTTAGTAGTGTTGATGAGGCGTATGATTTCTATTACAAATATGGTAAATGCAAAGGTTTTTCTGTTAGGAAAAGCGATGATAAGAAGAAAAATGGGTCTGATGGTACTAAAATAATAACAAACAAGCTTTTTGTATGCAGTAAACAAGGTTTAAGAGATAAGAAACACCTATGTAAGCTAAATAGGAAAAGATTGCACCGACGTTTGACACGTTCTAACTGCAATGCTAGGTTTCGTGTGACATACAAAGCCAATAAGGGTAAATTTGTAGTGTCTGTGTTTGAAGAGACTCATAACCATGAGTTAACCCCATCTAGGAAGAAAGGCTGCATATTTGAATTTATGCATAATTTTGAGCAGGCTGTGAGAAACTATAGAAATAACGAACTTGTTGCCGACTTTACATCAAAGTTCTCAGAACCTGTGCTGACAACTCAACTAAAAAAAATTGAGAGCCATGCCGCTGAAATTTTTACAGCGCAAATTTTCAAAGATGTGAAAGATGAAATCATGAAGGCTGGTGAATTGATTGTTAGGCAGAAGAAGGAAATTGGAGATACAAAGTTTTATACACTGACTAAATATTGTGTGGATAAGTACGAAAGAACAGTTATTTATGATGGCGTTACATTCCAATGTTCGTGCCGGATGTTTGATTCAAAAGGACTTCCGTGTTCTCATATTTTTAATGTGATGAAGGAAGAACATGTTGATCGCATTCATAGCAGTTTGATATTGTCGCGATGGACCAAGGATGCCAAAATTGCTTATTTGAACATGGCAGATGTTAATGGTTCAATTGATTCCGATTCGATTGAGCTTGCTCGTTTCGGGGCATATTGTTCTGTGTTTACAGCATTTTGCAAAGATGTTTCTAAAAAGGAAGGTGTGTATGGGGACATTATGGAGGACCTCATGAATTTAAGAAACAAATATTGCGGTGTGGAGGATCCTATTGGAACACAGAAGTCGGATGTTCGTGATCCAGTCCCGGTTAAGGTTAAAGGTGCTCCAAAGAGAAAAAAGAATGAAGCAAAAGCTGTCAGGCGCTGTACAAAATGCAACAGTCCTAGTCATAATGCGAGGACTTGTTCGGAGAAAAAGAGAAACAAAAGTTGCAATGCTGAAAATAGTGTTCAAACCATATATTCAGAGGTACCGGAAGACCGTTGTGAAAGTAGCGTGCAAAAGAAAAATAAATTTTCAGAGCAACCGAAAGATCGTGGTGAAAGTAGTTTTCAAAATAAAAAGAGACGTTGTGAGCAACCGAAAGATAATATTGAAAGCAGTATGCCAAAGCAAAAGAAATGCTCGATGCAACGGCAAAATCGTCGCGCTAATGTGTCAACACCAGCACAAACGGATGTTACAAGTACAGTCGGACAATTGACTCCCATGTATGGATTTCAACCTATGATGACTTACTTACATCCGATAATTCAACCGACGGACGCACCACATGTACCACCCATACAACCTGGATACCAATTATATGGAATGAATGTTGGTCTGTTACAACAAGTGATTAACTCTGCTGATAAAAAAGATTGA 1827 0.3837 MVEFDVSIDGDSNDVHSTAGNTNEAEDFNYSVSSGQGGSDDDEGDDDHEDEDEDEDEDDEDDGNANEFDDSAFVGNTVRINSMTSEEIRALEFSSVDEAYDFYYKYGKCKGFSVRKSDDKKKNGSDGTKIITNKLFVCSKQGLRDKKHLCKLNRKRLHRRLTRSNCNARFRVTYKANKGKFVVSVFEETHNHELTPSRKKGCIFEFMHNFEQAVRNYRNNELVADFTSKFSEPVLTTQLKKIESHAAEIFTAQIFKDVKDEIMKAGELIVRQKKEIGDTKFYTLTKYCVDKYERTVIYDGVTFQCSCRMFDSKGLPCSHIFNVMKEEHVDRIHSSLILSRWTKDAKIAYLNMADVNGSIDSDSIELARFGAYCSVFTAFCKDVSKKEGVYGDIMEDLMNLRNKYCGVEDPIGTQKSDVRDPVPVKVKGAPKRKKNEAKAVRRCTKCNSPSHNARTCSEKKRNKSCNAENSVQTIYSEVPEDRCESSVQKKNKFSEQPKDRGESSFQNKKRRCEQPKDNIESSMPKQKKCSMQRQNRRANVSTPAQTDVTSTVGQLTPMYGFQPMMTYLHPIIQPTDAPHVPPIQPGYQLYGMNVGLLQQVINSADKKD 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02474 608 MobiDBLite consensus disorder prediction 479 549 - -
Trre3g02474 608 MobiDBLite consensus disorder prediction 482 523 - -
Trre3g02474 608 PANTHER OS01G0519700 PROTEIN 203 480 - -
Trre3g02474 608 MobiDBLite consensus disorder prediction 524 549 - -
Trre3g02474 608 SMART 26again6 303 330 IPR006564 GO:0008270
Trre3g02474 608 ProSiteProfiles Zinc finger SWIM-type profile. 292 328 IPR007527 GO:0008270
Trre3g02474 608 MobiDBLite consensus disorder prediction 1 71 - -
Trre3g02474 608 MobiDBLite consensus disorder prediction 11 38 - -
Trre3g02474 608 MobiDBLite consensus disorder prediction 416 462 - -
Trre3g02474 608 Pfam FAR1 DNA-binding domain 101 195 IPR004330 -
Trre3g02474 608 MobiDBLite consensus disorder prediction 39 67 - -
Trre3g02474 608 Pfam SWIM zinc finger 298 320 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02474 Trre-Chr3 23952992 23955824 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g02474 FAR1 4e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02474 - - tpra:123887991 561.607