Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02473 ATGGTAGAATTCGATGTATCTATTGATGGTGATTCGAATGATGTTCATTCAACTGCTGGTAATACTAATGAAGCTGAAGATTTCAACTATTCGGTATCCAGTGGGCAGGGTGGGTCGGATGATGATGAAGGTGATGATGATCATGAGGATGAGGATGAGGATGAGGATGAGGATGACGAGGATGATGGCAATGCCAATGAATTTGATGATTCTGCATTTGTAGGCAATACGGTACGTATTAATTCTATGACTTCTGAAGAAATACGTGCTTTGGAATTTAGTAGTGTTGATGAGGCGTATGATTTCTATTACAAATATGGTAAATGCAAAGGTTTTTCTGTTAGGAAAAGCGATGATAAGAAGAAAAATGGGTCTGATGGTACTAAAATAATAACAAACAAGCTTTTTGTATGCAGTAAACAAGGTTTAAGAGATAAGAAACACCTATGTAAGCTAAATAGGAAAAGATTGCACCGACGTTTGACACGTTCTAACTGCAATGCTAGGTTTCGTGTGACATACAAAGCCAATAAGGGTAAATTTGTAGTGTCTGTGTTTGAAGAGACTCATAACCATGAGTTAACCCCATCTAGGTATGTGCACTTACACCCGGCTGTGAGAAACTATAGAAATAACGAACTTGTTGCCGACTTTACATCAAAGTTCTCAGAACCTGTGCTGACAACTCAACTAAAAAAAATTGAGAGCCATGCCGCTGAAATTTTTACAGCGCAAATTTTCAAAGATGTGAAAGATGAAATCATGAAGGCTGGTGAATTGATTGTTAGGCAGAAGAAGGAAATTGGAGATACAAAGTTTTATACACTGACTAAATATTGTGTGGATAAGTACGAAAGAACAGTTATTTATGATGGCGTTACATTCCAATGTTCGTGCCGGATGTTTGATTCAAAAGGACTTCCGTGTTCTCATATTTTTAATGTGATGAAGGAAGAACATGTTGATCGCATTCATAGCAGTTTGATATTGTCGCGATGGACCAAGGATGCCAAAATTGCTTATTTGAACATGGCAGATGTTAATGGTTCAATTGATTCCGATTCGATTGAGCTTGCTCGTTTCGGGGCATATTGTTCTGTGTTTACAGCATTTTGCAAAGATGTTTCTAAAAAGGAAGGTGTGTATGGGGACATTATGGAGGACCTCATGAATTTAAGAAACAAATATTGCGGTGTGGAGGATCCTATTGGAACACAGAAGTCGGATGTTCGTGATCCAGTCCCGGTTAAGGTTAAAGGTGCTCCAAAGAGAAAAAAGAATGAAGCAAAAGCTGTCAGGCGCTGTACAAAATGCAACAGTCCTAGTCATAATGCGAGGACTTGTTCGGAGAAAAAGAGAAACAAAAGTTGCAATGCTGAAAATAGTGTTCAAACCATATATTCAGAGGTACCGGAAGACCGTTGTGAAAGTAGCGTGCAAAAGAAAAATAAATTTTCAGAGCAACCGAAAGATCGTGGTGAAAGTAGTTTTCAAAATAAAAAGAGACGTTGTGAGCAACCGAAAGATAATATTGAAAGCAGTATGCCAAAGCAAAAGAAATGCTCGATGCAACGGCAAAATCGTCGCGCTAATGTGTCAACACCAGCACAAACGGATGTTACAAGTACAGTCGGACAATTGACTCCCATGTATGGATTTCAACCTATGATGACTTACTTACATCCGATAATTCAACCGACGGACGCACCACATGTACCACCCATACAACCTGGATACCAATTATATGGAATGAATGTTGGTCTGTTACAACAAGTGATTAACTCTGCTGATAAAAAAGATTGA 1803 0.3866 MVEFDVSIDGDSNDVHSTAGNTNEAEDFNYSVSSGQGGSDDDEGDDDHEDEDEDEDEDDEDDGNANEFDDSAFVGNTVRINSMTSEEIRALEFSSVDEAYDFYYKYGKCKGFSVRKSDDKKKNGSDGTKIITNKLFVCSKQGLRDKKHLCKLNRKRLHRRLTRSNCNARFRVTYKANKGKFVVSVFEETHNHELTPSRYVHLHPAVRNYRNNELVADFTSKFSEPVLTTQLKKIESHAAEIFTAQIFKDVKDEIMKAGELIVRQKKEIGDTKFYTLTKYCVDKYERTVIYDGVTFQCSCRMFDSKGLPCSHIFNVMKEEHVDRIHSSLILSRWTKDAKIAYLNMADVNGSIDSDSIELARFGAYCSVFTAFCKDVSKKEGVYGDIMEDLMNLRNKYCGVEDPIGTQKSDVRDPVPVKVKGAPKRKKNEAKAVRRCTKCNSPSHNARTCSEKKRNKSCNAENSVQTIYSEVPEDRCESSVQKKNKFSEQPKDRGESSFQNKKRRCEQPKDNIESSMPKQKKCSMQRQNRRANVSTPAQTDVTSTVGQLTPMYGFQPMMTYLHPIIQPTDAPHVPPIQPGYQLYGMNVGLLQQVINSADKKD 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02473 600 MobiDBLite consensus disorder prediction 516 541 - -
Trre3g02473 600 Pfam SWIM zinc finger 290 312 IPR007527 GO:0008270
Trre3g02473 600 ProSiteProfiles Zinc finger SWIM-type profile. 284 320 IPR007527 GO:0008270
Trre3g02473 600 MobiDBLite consensus disorder prediction 1 71 - -
Trre3g02473 600 SMART 26again6 295 322 IPR006564 GO:0008270
Trre3g02473 600 MobiDBLite consensus disorder prediction 11 38 - -
Trre3g02473 600 MobiDBLite consensus disorder prediction 408 454 - -
Trre3g02473 600 MobiDBLite consensus disorder prediction 474 515 - -
Trre3g02473 600 Pfam FAR1 DNA-binding domain 101 195 IPR004330 -
Trre3g02473 600 MobiDBLite consensus disorder prediction 471 541 - -
Trre3g02473 600 PANTHER OS01G0519700 PROTEIN 205 473 - -
Trre3g02473 600 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02473 Trre-Chr3 23952992 23955824 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g02473 FAR1 3.9e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02473 - - tpra:123887991 533.872