Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02469 ATGGAAGAACAAAAAAGCATGAAAGACAACAAAACGACAAAAAACGAGGTTGTTCTTAGAATTTCCAACAATGAAGAAAACAGAGATTTTGGAACCACCCAAGTTGCTGAAACAAGTTCAAACTCTCCTCAGTTCATTTCCAACATGGGTTCATCTTCATCTCCAAAAGGGTCACATGCAGAACTCGTTGAGCTTGAAAATCTTAGAACAACAAGCACTTTCTTTGGTCGGTCAGAATTTTCAAAGCCAAAATCAAGAATGGTGGAACCAACATTTCCAAAAGATGCAAAATTTGTTGAAGAAAAGACTCAAATGAAGAGTTCAAATTCTCCTTCAAGGGATGTTCATGATGGAATTGGAGCAGTTGTTACCCCTAGAGAGGTTGAAGAAGAAGATGATGATGATGAAGAAGTTTACAAGACTGCAGAAATTGAAGTTAGTAAGAGATCTGGTAAAAAGAGGAAATTTTTTAGTTGGATTGAGTTGTTAGCATTTGTTTTAATTTTAGGGTTTTTGATTGCAAGTTTAGTAGTTCATAAATTGCAAAAGAAAGAAATTTGGAGTTTAGAACTTTGGAAATGGTGTGTGCTTACATTGGTAATTATCTCTGGTAGATTAGTCACTAGTTGGTTTATCAATGTTTTAGTTTTCTTAATTGAAAGAAACTTTTTGTTTAAGAGGAAAGTTTTGTACTTTGTTTATGGTGTTAGAAAAAGTGTTCAAGCTTTTGTATGGTTTAGTTTGGTTCTATTGGTATGGAGTTTAATTTTTCACCAAGGTGTTAAGAGAACAAGAAGAGTTACTACGATTCTTGATTACATCACAAGGGCACTTGCATCTTGTGTTATTTCGGCTGCTATATGGTTAGCGAAAACATTGTTGATTAAGCTATTGTCTTCGTATTTTCAGTCGACTAGATTTTTCGATAGAGTTCAAGAATCGATTTTTCATCAGTACATTCTTAGGACTCTTTCTGGTCCTCCTTTGATGGAGATGGTTGAAACAGTTGGCAAGAGTTCGAGTAACAGCCGACTAAGTTTCAAGACTAATAAAAAAAAAGGGAAGAAGGAACAAGAACAAGTTATTGATGTAGACAAGCTTAAGAAAATGAAACAAGGGAAAGTTTCGGCTTGGACTATGAAAGGATTGATTAATGTCATAAGGAGTTCTGGTTTGTCGACGATCAGTTATACACCAGAGAGCATATATGAAGAAGTTAGTGACAATAATGATAACGAAATTAGAAGTGAGTGGGAAGCGAAGGCGGCTGCATATCGTATTTTCAGGAATGTTGCTAAGCCGGGAAGCAAGTACATTGAGATGGAAGATCTCTTGCGCTTCATGAAAATTGAAGAAGTGGAAAATTTGCTTCCCTTATTTGAAGGAGCGGTTGAGACTAGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGCTGGTGAAAGTTTACCTAGAACGCCGATCACTTGTGCATTCACTAAATGATACCAAAACAGCTGTTGATGAACTGAATAACCTTGCTTCTGCAATTGTTCTTGTTGTCGCCATTATTGTGTGGTTGCTTGTGATGGGATTCTTAACAACCCAAGTTCTTGTCTTTATTTCATCACAGCTTTTACTTGTGGTGTTTGTTTTTGGCAACACAGCTAAGACAACATTTGAAGCTATTGTATTTGTTTTTGTGATGCATCCGTTTGACGTTGGTGATCGATGCGTCATTGATGGTGTTCAGATGATTGTAGAAGAGATGAACATATTGACTACAATCTTTTTGAGATATGACAATGAAAAGATATTCTATCCAAATTCAGTTCTGGCAACCAAGCCAATCAGTAACTTCTACCGGAGTCCAGAAATGTGTGATTCAGTTGAATTTGCTGTTGATGTTTCAACTTCAATAGAAAGTATCGGAGCCTTAAAGGCTAGATTAAAAGTATACTTGGAAAATAGGCCTCAACATTGGCGTCCAACACACAATGTAGTGGTTAAGGATATTGAGAATGTAAACAAGATGAAAATAGGTCTATATGTTACTCACACGATAAACTTTCAGAATTATACGGATAGGAACATCAGAAGATCTGAATTAGTCTTGGAGTTAAAGAAAATCCTTGAAGATCTTCATATTAAATATCATCTGCTGCCACAAGAAGTACTTCTTAATCATGTAAGTTCACAAGACCATCATAAGGCAAAAATAGTTTAA 2202 0.3583 MEEQKSMKDNKTTKNEVVLRISNNEENRDFGTTQVAETSSNSPQFISNMGSSSSPKGSHAELVELENLRTTSTFFGRSEFSKPKSRMVEPTFPKDAKFVEEKTQMKSSNSPSRDVHDGIGAVVTPREVEEEDDDDEEVYKTAEIEVSKRSGKKRKFFSWIELLAFVLILGFLIASLVVHKLQKKEIWSLELWKWCVLTLVIISGRLVTSWFINVLVFLIERNFLFKRKVLYFVYGVRKSVQAFVWFSLVLLVWSLIFHQGVKRTRRVTTILDYITRALASCVISAAIWLAKTLLIKLLSSYFQSTRFFDRVQESIFHQYILRTLSGPPLMEMVETVGKSSSNSRLSFKTNKKKGKKEQEQVIDVDKLKKMKQGKVSAWTMKGLINVIRSSGLSTISYTPESIYEEVSDNNDNEIRSEWEAKAAAYRIFRNVAKPGSKYIEMEDLLRFMKIEEVENLLPLFEGAVETRRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVDELNNLASAIVLVVAIIVWLLVMGFLTTQVLVFISSQLLLVVFVFGNTAKTTFEAIVFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMCDSVEFAVDVSTSIESIGALKARLKVYLENRPQHWRPTHNVVVKDIENVNKMKIGLYVTHTINFQNYTDRNIRRSELVLELKKILEDLHIKYHLLPQEVLLNHVSSQDHHKAKIV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02469 733 MobiDBLite consensus disorder prediction 1 58 - -
Trre3g02469 733 MobiDBLite consensus disorder prediction 1 15 - -
Trre3g02469 733 SUPERFAMILY Sm-like ribonucleoproteins 552 612 IPR010920 -
Trre3g02469 733 PIRSF Memb_At2g17000 1 730 IPR016688 -
Trre3g02469 733 Gene3D - 563 612 IPR023408 -
Trre3g02469 733 Pfam Mechanosensitive ion channel 504 709 IPR006685 GO:0016020|GO:0055085
Trre3g02469 733 FunFam Predicted mechanosensitive ion channel 563 612 - -
Trre3g02469 733 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 3 722 IPR016688 -
Trre3g02469 733 MobiDBLite consensus disorder prediction 101 134 - -
Trre3g02469 733 MobiDBLite consensus disorder prediction 16 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02469 Trre-Chr3 23873690 23877971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02469 1 719 Mechanosensitive Ion Channel Family AT5G12080 50.475 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02469 K22048 - gmx:100777332 1013.06