Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02463 ATGAACGGTGGTGAAGGAGACAAAACGTTGCCAATAGCAAATGTTGGTAGAATAATGAAACAAAATCTTCCTCCCAATGCAAAGATCTCAAAAGAAAGCAAACAATTGATGCAAGAATGTGCGACAGAGTTCATAAGTTTTGTGACAGGTGAAGCATCTGACAAGTGTCACAAAGAGAATCGAAAGACTGTTAGTGGAGATGATATCTGTTGGGCTCTGTGTTCATTAGGGTTTGATAACTATGCTGAAGCCATTGGAAGGTATTTGTATAAATACAGACAAGCTGAACTTGTTAAATTCAATCTGAACAAACTTGAGACACAAAAAGACAAAGTTTGA 339 0.3717 MNGGEGDKTLPIANVGRIMKQNLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRYLYKYRQAELVKFNLNKLETQKDKV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02463 112 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre3g02463 112 SUPERFAMILY Histone-fold 7 98 IPR009072 GO:0046982
Trre3g02463 112 Gene3D Histone, subunit A 1 111 IPR009072 GO:0046982
Trre3g02463 112 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 96 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre3g02463 112 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Trre3g02463 112 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Trre3g02463 112 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Trre3g02463 112 Coils Coil 95 112 - -
Trre3g02463 112 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02463 Trre-Chr3 23685322 23685660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02463 7 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.449 4.27e-51 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre3g02463 CBFD_NFYB_HMF 8.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02463 K08065 - gmx:100815151 172.94